[MacPorts] #19411: No R binaries and error during 2.9.0 installation

MacPorts noreply at macports.org
Thu Apr 23 18:48:29 PDT 2009 

#19411: No R binaries and error during 2.9.0 installation
------------------------------------------+---------------------------------
  Reporter:  pawel.matykiewicz@…          |       Owner:  macports-tickets@…                   
      Type:  defect                       |      Status:  closed                               
  Priority:  Normal                       |   Milestone:  Port Bugs                            
 Component:  ports                        |     Version:  1.7.1                                
Resolution:  invalid                      |    Keywords:  R binaries packages                  
      Port:  R                            |  
------------------------------------------+---------------------------------

Comment(by pawel.matykiewicz@…):

 It works but you get a lot of warnings. Below example after removing 2
 other violating packages:

 {{{
 Warning: File /opt/local/lib/R/library/survival/data/leukemia.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/leukemia.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/minn2000.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/minn2000.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/minn2004.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/minn2004.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/minndecennial.dat
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/data/minndecennial.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/minnpred.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/minnpred.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/pbcseq.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/pbcseq.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us1996.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us1996.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us1997.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us1997.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us1998.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us1998.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us1999.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us1999.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us2000.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us2000.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us2001.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us2001.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us2002.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us2002.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us2003.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us2003.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/us2004.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/us2004.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/usdecennial.dat
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/data/usdecennial.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/data/usinfant.dat already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/data/usinfant.dat.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/aareg already exists.
 Moving to: /opt/local/lib/R/library/survival/help/aareg.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/basehaz already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/basehaz.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/cgd already exists.
 Moving to: /opt/local/lib/R/library/survival/help/cgd.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/coxph.control already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/coxph.control.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/dsurvreg already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/dsurvreg.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/mgus already exists.
 Moving to: /opt/local/lib/R/library/survival/help/mgus.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/pbcseq already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/pbcseq.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/plot.aareg already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/plot.aareg.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/print.aareg already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/print.aareg.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/print.summary.coxph
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/help/print.summary.coxph.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/print.summary.survfit
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/help/print.summary.survfit.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/summary.aareg already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/summary.aareg.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/summary.coxph already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/summary.coxph.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/survConcordance
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/help/survConcordance.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/survfit.coxph already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/survfit.coxph.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/help/survregDtest already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/help/survregDtest.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/aareg.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/aareg.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/basehaz.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/basehaz.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/cgd.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/cgd.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/coxph.control.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/coxph.control.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/dsurvreg.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/dsurvreg.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/mgus.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/mgus.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/pbcseq.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/pbcseq.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/plot.aareg.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/plot.aareg.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/print.aareg.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/print.aareg.html.mp_1240537426.
 Warning: File
 /opt/local/lib/R/library/survival/html/print.summary.coxph.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/print.summary.coxph.html.mp_1240537426.
 Warning: File
 /opt/local/lib/R/library/survival/html/print.summary.survfit.html already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/html/print.summary.survfit.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/summary.aareg.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/summary.aareg.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/summary.coxph.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/summary.coxph.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/survConcordance.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/survConcordance.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/survfit.coxph.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/survfit.coxph.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/html/survregDtest.html
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/html/survregDtest.html.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/aareg.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/aareg.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/basehaz.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/basehaz.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/cgd.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/cgd.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/coxph.control.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/coxph.control.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/dsurvreg.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/dsurvreg.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/mgus.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/mgus.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/pbcseq.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/pbcseq.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/plot.aareg.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/plot.aareg.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/print.aareg.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/print.aareg.tex.mp_1240537426.
 Warning: File
 /opt/local/lib/R/library/survival/latex/print.summary.coxph.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/print.summary.coxph.tex.mp_1240537426.
 Warning: File
 /opt/local/lib/R/library/survival/latex/print.summary.survfit.tex already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/print.summary.survfit.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/summary.aareg.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/summary.aareg.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/summary.coxph.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/summary.coxph.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/survConcordance.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/survConcordance.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/survfit.coxph.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/survfit.coxph.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/latex/survregDtest.tex
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/latex/survregDtest.tex.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/R-ex/aareg.R already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/R-ex/aareg.R.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/R-ex/dsurvreg.R already
 exists.  Moving to:
 /opt/local/lib/R/library/survival/R-ex/dsurvreg.R.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/R-ex/summary.aareg.R
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/R-ex/summary.aareg.R.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/R-ex/summary.coxph.R
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/R-ex/summary.coxph.R.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/R-ex/survConcordance.R
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/R-ex/survConcordance.R.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/R-ex/survfit.coxph.R
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/R-ex/survfit.coxph.R.mp_1240537426.
 Warning: File /opt/local/lib/R/library/survival/R-ex/survregDtest.R
 already exists.  Moving to:
 /opt/local/lib/R/library/survival/R-ex/survregDtest.R.mp_1240537426.
 }}}

-- 
Ticket URL: <http://trac.macports.org/ticket/19411#comment:3>
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