[MacPorts] #20822: shogun 0.8 fails to build

[MacPorts]

#20822: shogun 0.8 fails to build
------------------------------------------+---------------------------------
 Reporter:  macsforever2000@…             |       Owner:  jameskyle@…           
     Type:  defect                        |      Status:  new                   
 Priority:  Normal                        |   Milestone:                        
Component:  ports                         |     Version:  1.7.1                 
 Keywords:                                |        Port:  shogun                
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 Mac OS X 10.5.8 Intel. Xcode 3.1.3.

 {{{
 --->  Computing dependencies for shogun
 --->  Fetching shogun
 --->  Attempting to fetch shogun-0.8.0.tar.bz2 from
 http://distfiles.macports.org/shogun
 --->  Verifying checksum(s) for shogun
 --->  Extracting shogun
 --->  Configuring shogun
 --->  Building shogun
 Error: Target org.macports.build returned: shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_math_shogun/work/shogun-0.8.0/src"
 && /usr/bin/make -j5 all " returned error 2
 Command output:       CGUIClassifier::new_classifier(char*, int, int) in
 GUIClassifier.cpp.o
   "CPlifMatrix::set_plif_min_values(double*, int)", referenced from:
       CSGInterface::cmd_set_plif_struct()       in SGInterface.cpp.o
   "CDynProg::get_states(int**, int*, int*)", referenced from:
       CSGInterface::cmd_best_path_trans()       in SGInterface.cpp.o
   "CDynProg::get_path_losses(double**, int*)", referenced from:
       CSGInterface::cmd_best_path_trans_deriv()       in SGInterface.cpp.o
   "CPlifMatrix::set_plif_names(T_STRING<char>*, int, int)", referenced
 from:
       CSGInterface::cmd_set_plif_struct()       in SGInterface.cpp.o
   "CIntronList::read_introns(int*, int*, int*, int)", referenced from:
       CSGInterface::cmd_init_intron_list()       in SGInterface.cpp.o
   "CDynProg::get_positions(int**, int*, int*)", referenced from:
       CSGInterface::cmd_best_path_trans()       in SGInterface.cpp.o
   "CDynProg::best_path_trans_deriv(int*, int*, int, double const*, int)",
 referenced from:
       CSGInterface::cmd_best_path_trans_deriv()       in SGInterface.cpp.o
   "CIntronList::CIntronList()", referenced from:
       CSGInterface::cmd_init_intron_list()       in SGInterface.cpp.o
   "CSVM::compute_svm_primal_objective()", referenced from:
       CSGInterface::do_compute_objective(E_WHICH_OBJ)        in
 SGInterface.cpp.o
       CSGInterface::do_compute_objective(E_WHICH_OBJ)        in
 SGInterface.cpp.o
       CSGInterface::do_compute_objective(E_WHICH_OBJ)        in
 SGInterface.cpp.o
   "CMKLOneClass::CMKLOneClass(CSVM*)", referenced from:
       CGUIClassifier::new_classifier(char*, int, int) in
 GUIClassifier.cpp.o
   "CDynProg::get_scores(double**, int*)", referenced from:
       CSGInterface::cmd_best_path_trans()       in SGInterface.cpp.o
 ld: symbol(s) not found
 collect2: ld returned 1 exit status
 make[1]: *** [libshogunui.2.0.dylib] Error 1
 make[1]: *** Waiting for unfinished jobs....
 make: *** [all] Error 2

 Error: Unable to upgrade port: 1
 }}}

-- 
Ticket URL: <http://trac.macports.org/ticket/20822>
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