[MacPorts] #18246: linker error in openmpi port

[MacPorts]

#18246: linker error in openmpi port
-------------------------------+--------------------------------------------
 Reporter:  gamperl@…          |       Owner:  macports-tickets@…                   
     Type:  defect             |      Status:  new                                  
 Priority:  Normal             |   Milestone:  Port Bugs                            
Component:  ports              |     Version:  1.7.0                                
 Keywords:                     |        Port:  openmpi                              
-------------------------------+--------------------------------------------
 Updating the openmpi results in the following error:


 {{{
 --->  Building openmpi
 Error: Target org.macports.build returned: shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build"
 && make all " returned error 2
 Command output: Making all in mca/rmaps/round_robin
 make[2]: Nothing to be done for `all'.
 Making all in mca/rmaps/seq
 make[2]: Nothing to be done for `all'.
 Making all in mca/rml/oob
 make[2]: Nothing to be done for `all'.
 Making all in mca/routed/binomial
 make[2]: Nothing to be done for `all'.
 Making all in mca/routed/direct
 make[2]: Nothing to be done for `all'.
 Making all in mca/routed/linear
 make[2]: Nothing to be done for `all'.
 Making all in tools/orte-checkpoint
 make[2]: Nothing to be done for `all'.
 Making all in tools/orte-clean
 make[2]: Nothing to be done for `all'.
 Making all in tools/orte-iof
 /bin/sh ../../../libtool --tag=CC   --mode=link /usr/bin/gcc-4.0  -DNDEBUG
 -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden  -export-
 dynamic -L/opt/local/lib  -o orte-iof orte-iof.o ../../../orte/libopen-
 rte.la -lutil
 libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
 strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o
 -L/opt/local/lib ../../../orte/.libs/libopen-rte.a
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/.libs
 /libopen-pal.a -lutil
 Undefined symbols:
   "_orte_iof", referenced from:
       _orte_iof$non_lazy_ptr in orte-iof.o
   "_orte_routed", referenced from:
       _orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o)
       _orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)
 ld: symbol(s) not found
 collect2: ld returned 1 exit status
 make[2]: *** [orte-iof] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all-recursive] Error 1

 Error: Unable to upgrade port: 1
 --->  Activating hdf5 @1.6.8_0
 Error: Activating hdf5 @1.6.8_0 failed: Image error: /opt/local/bin/gif2h5
 is being used by the active hdf5-18 port.  Please deactivate this port
 first, or use the -f flag to force the activation.
 --->  Activating hdf5 @1.6.8_0
 Error: Activating hdf5 @1.6.8_0 failed: Image error: /opt/local/bin/gif2h5
 is being used by the active hdf5-18 port.  Please deactivate this port
 first, or use the -f flag to force the activation.
 --->  Building openmpi
 Error: Target org.macports.build returned: shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build"
 && make all " returned error 2
 Command output: Making all in mca/rmaps/round_robin
 make[2]: Nothing to be done for `all'.
 Making all in mca/rmaps/seq
 make[2]: Nothing to be done for `all'.
 Making all in mca/rml/oob
 make[2]: Nothing to be done for `all'.
 Making all in mca/routed/binomial
 make[2]: Nothing to be done for `all'.
 Making all in mca/routed/direct
 make[2]: Nothing to be done for `all'.
 Making all in mca/routed/linear
 make[2]: Nothing to be done for `all'.
 Making all in tools/orte-checkpoint
 make[2]: Nothing to be done for `all'.
 Making all in tools/orte-clean
 make[2]: Nothing to be done for `all'.
 Making all in tools/orte-iof
 /bin/sh ../../../libtool --tag=CC   --mode=link /usr/bin/gcc-4.0  -DNDEBUG
 -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden  -export-
 dynamic -L/opt/local/lib  -o orte-iof orte-iof.o ../../../orte/libopen-
 rte.la -lutil
 libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
 strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o
 -L/opt/local/lib ../../../orte/.libs/libopen-rte.a
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/.libs
 /libopen-pal.a -lutil
 Undefined symbols:
   "_orte_iof", referenced from:
       _orte_iof$non_lazy_ptr in orte-iof.o
   "_orte_routed", referenced from:
       _orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o)
       _orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)
 ld: symbol(s) not found
 collect2: ld returned 1 exit status
 make[2]: *** [orte-iof] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all-recursive] Error 1

 }}}

-- 
Ticket URL: <http://trac.macports.org/ticket/18246>
MacPorts <http://www.macports.org/>
Ports system for Mac OS