[MacPorts] #20342: nco-3.9.8 Conflicting types - build error

[MacPorts]

#20342: nco-3.9.8 Conflicting types - build error
-------------------------------+--------------------------------------------
 Reporter:  uthyr@…            |       Owner:  takeshi@…           
     Type:  defect             |      Status:  new                 
 Priority:  Normal             |   Milestone:                      
Component:  ports              |     Version:  1.7.1               
 Keywords:  netcdf             |        Port:  nco                 
-------------------------------+--------------------------------------------
Changes (by macsforever2000@…):

  * keywords:  nco netcdf => netcdf
  * owner:  macports-tickets@… => takeshi@…


Old description:

> I've tried building nco with netcdf configured for each fortran variant
> (netcdf +g95, netcdf +gfortran).  in both cases, I get these identical
> conflicting type definitions.
>
> Errors are:
>
> Making all in nco
> /bin/sh ../../libtool --tag=CXX --tag=CC   --mode=compile
> /usr/bin/gcc-4.0 -std=gnu99 -DHAVE_CONFIG_H -I. -I../..
> -I/opt/local/include -I/usr/include/malloc -I/opt/local/include  -fno-
> common -O2 -std=c99 -D_BSD_SOURCE  -c -o nco_att_utl.lo nco_att_utl.c
> libtool: compile:  /usr/bin/gcc-4.0 -std=gnu99 -DHAVE_CONFIG_H -I.
> -I../.. -I/opt/local/include -I/usr/include/malloc -I/opt/local/include
> -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_att_utl.c -o nco_att_utl.o
> In file included from nco_netcdf.h:27,
>                  from nco_att_utl.h:26,
>                  from nco_att_utl.c:9:
> nco_typ.h:76:1: warning: "NC_FILL_INT64" redefined
> In file included from nco_att_utl.h:25,
>                  from nco_att_utl.c:9:
> /opt/local/include/netcdf.h:92:1: warning: this is the location of the
> previous definition
> In file included from nco_netcdf.h:27,
>                  from nco_att_utl.h:26,
>                  from nco_att_utl.c:9:
> nco_typ.h:77:1: warning: "NC_FILL_UINT64" redefined
> In file included from nco_att_utl.h:25,
>                  from nco_att_utl.c:9:
> /opt/local/include/netcdf.h:93:1: warning: this is the location of the
> previous definition
> In file included from nco_att_utl.h:26,
>                  from nco_att_utl.c:9:
> nco_netcdf.h:165: error: conflicting types for 'nc_def_var_chunking'
> /opt/local/include/netcdf.h:688: error: previous declaration of
> 'nc_def_var_chunking' was here
> nco_netcdf.h:171: error: conflicting types for 'nc_get_var1_ushort'
> /opt/local/include/netcdf.h:1032: error: previous declaration of
> 'nc_get_var1_ushort' was here
> nco_netcdf.h:183: error: conflicting types for 'nc_put_var1_string'
> /opt/local/include/netcdf.h:1060: error: previous declaration of
> 'nc_put_var1_string' was here
> nco_netcdf.h:187: error: conflicting types for 'nc_get_vara_ushort'
> /opt/local/include/netcdf.h:1147: error: previous declaration of
> 'nc_get_vara_ushort' was here
> nco_netcdf.h:199: error: conflicting types for 'nc_put_vara_string'
> /opt/local/include/netcdf.h:1175: error: previous declaration of
> 'nc_put_vara_string' was here
> nco_netcdf.h:203: error: conflicting types for 'nc_get_vars_ushort'
> /opt/local/include/netcdf.h:1282: error: previous declaration of
> 'nc_get_vars_ushort' was here
> nco_netcdf.h:215: error: conflicting types for 'nc_put_vars_string'
> /opt/local/include/netcdf.h:1317: error: previous declaration of
> 'nc_put_vars_string' was here
> nco_netcdf.h:219: error: conflicting types for 'nc_get_varm_ushort'
> /opt/local/include/netcdf.h:1425: error: previous declaration of
> 'nc_get_varm_ushort' was here
> nco_netcdf.h:231: error: conflicting types for 'nc_put_varm_string'
> /opt/local/include/netcdf.h:1460: error: previous declaration of
> 'nc_put_varm_string' was here
> nco_netcdf.h:240: error: conflicting types for 'nc_put_att_string'
> /opt/local/include/netcdf.h:916: error: previous declaration of
> 'nc_put_att_string' was here
> nco_netcdf.h:245: error: conflicting types for 'nc_get_att_ushort'
> /opt/local/include/netcdf.h:890: error: previous declaration of
> 'nc_get_att_ushort' was here
> In file included from nco_att_utl.h:29,
>                  from nco_att_utl.c:9:
> nco.h:183:1: warning: "NC_NETCDF4" redefined
> In file included from nco_att_utl.h:25,
>                  from nco_att_utl.c:9:
> /opt/local/include/netcdf.h:151:1: warning: this is the location of the
> previous definition
> make[3]: *** [nco_att_utl.lo] Error 1
> make[2]: *** [all-recursive] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
> Error: Target org.macports.build returned: shell command " cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_nco/work/nco-3.9.8"
> && make all " returned error 2
> Command output: nco_netcdf.h:171: error: conflicting types for
> 'nc_get_var1_ushort'
> /opt/local/include/netcdf.h:1032: error: previous declaration of
> 'nc_get_var1_ushort' was here
> nco_netcdf.h:183: error: conflicting types for 'nc_put_var1_string'
> /opt/local/include/netcdf.h:1060: error: previous declaration of
> 'nc_put_var1_string' was here
> nco_netcdf.h:187: error: conflicting types for 'nc_get_vara_ushort'
> /opt/local/include/netcdf.h:1147: error: previous declaration of
> 'nc_get_vara_ushort' was here
> nco_netcdf.h:199: error: conflicting types for 'nc_put_vara_string'
> /opt/local/include/netcdf.h:1175: error: previous declaration of
> 'nc_put_vara_string' was here
> nco_netcdf.h:203: error: conflicting types for 'nc_get_vars_ushort'
> /opt/local/include/netcdf.h:1282: error: previous declaration of
> 'nc_get_vars_ushort' was here
> nco_netcdf.h:215: error: conflicting types for 'nc_put_vars_string'
> /opt/local/include/netcdf.h:1317: error: previous declaration of
> 'nc_put_vars_string' was here
> nco_netcdf.h:219: error: conflicting types for 'nc_get_varm_ushort'
> /opt/local/include/netcdf.h:1425: error: previous declaration of
> 'nc_get_varm_ushort' was here
> nco_netcdf.h:231: error: conflicting types for 'nc_put_varm_string'
> /opt/local/include/netcdf.h:1460: error: previous declaration of
> 'nc_put_varm_string' was here
> nco_netcdf.h:240: error: conflicting types for 'nc_put_att_string'
> /opt/local/include/netcdf.h:916: error: previous declaration of
> 'nc_put_att_string' was here
> nco_netcdf.h:245: error: conflicting types for 'nc_get_att_ushort'
> /opt/local/include/netcdf.h:890: error: previous declaration of
> 'nc_get_att_ushort' was here
> In file included from nco_att_utl.h:29,
>                  from nco_att_utl.c:9:
> nco.h:183:1: warning: "NC_NETCDF4" redefined
> In file included from nco_att_utl.h:25,
>                  from nco_att_utl.c:9:
> /opt/local/include/netcdf.h:151:1: warning: this is the location of the
> previous definition
> make[3]: *** [nco_att_utl.lo] Error 1
> make[2]: *** [all-recursive] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
>
> Warning: the following items did not execute (for nco):
> org.macports.activate org.macports.build org.macports.destroot
> org.macports.install
> Error: Status 1 encountered during processing.
> salome stow>

New description:

 I've tried building nco with netcdf configured for each fortran variant
 (netcdf +g95, netcdf +gfortran).  in both cases, I get these identical
 conflicting type definitions.

 Errors are:

 {{{
 Making all in nco
 /bin/sh ../../libtool --tag=CXX --tag=CC   --mode=compile /usr/bin/gcc-4.0
 -std=gnu99 -DHAVE_CONFIG_H -I. -I../..   -I/opt/local/include
 -I/usr/include/malloc -I/opt/local/include  -fno-common -O2 -std=c99
 -D_BSD_SOURCE  -c -o nco_att_utl.lo nco_att_utl.c
 libtool: compile:  /usr/bin/gcc-4.0 -std=gnu99 -DHAVE_CONFIG_H -I. -I../..
 -I/opt/local/include -I/usr/include/malloc -I/opt/local/include -fno-
 common -O2 -std=c99 -D_BSD_SOURCE -c nco_att_utl.c -o nco_att_utl.o
 In file included from nco_netcdf.h:27,
                  from nco_att_utl.h:26,
                  from nco_att_utl.c:9:
 nco_typ.h:76:1: warning: "NC_FILL_INT64" redefined
 In file included from nco_att_utl.h:25,
                  from nco_att_utl.c:9:
 /opt/local/include/netcdf.h:92:1: warning: this is the location of the
 previous definition
 In file included from nco_netcdf.h:27,
                  from nco_att_utl.h:26,
                  from nco_att_utl.c:9:
 nco_typ.h:77:1: warning: "NC_FILL_UINT64" redefined
 In file included from nco_att_utl.h:25,
                  from nco_att_utl.c:9:
 /opt/local/include/netcdf.h:93:1: warning: this is the location of the
 previous definition
 In file included from nco_att_utl.h:26,
                  from nco_att_utl.c:9:
 nco_netcdf.h:165: error: conflicting types for 'nc_def_var_chunking'
 /opt/local/include/netcdf.h:688: error: previous declaration of
 'nc_def_var_chunking' was here
 nco_netcdf.h:171: error: conflicting types for 'nc_get_var1_ushort'
 /opt/local/include/netcdf.h:1032: error: previous declaration of
 'nc_get_var1_ushort' was here
 nco_netcdf.h:183: error: conflicting types for 'nc_put_var1_string'
 /opt/local/include/netcdf.h:1060: error: previous declaration of
 'nc_put_var1_string' was here
 nco_netcdf.h:187: error: conflicting types for 'nc_get_vara_ushort'
 /opt/local/include/netcdf.h:1147: error: previous declaration of
 'nc_get_vara_ushort' was here
 nco_netcdf.h:199: error: conflicting types for 'nc_put_vara_string'
 /opt/local/include/netcdf.h:1175: error: previous declaration of
 'nc_put_vara_string' was here
 nco_netcdf.h:203: error: conflicting types for 'nc_get_vars_ushort'
 /opt/local/include/netcdf.h:1282: error: previous declaration of
 'nc_get_vars_ushort' was here
 nco_netcdf.h:215: error: conflicting types for 'nc_put_vars_string'
 /opt/local/include/netcdf.h:1317: error: previous declaration of
 'nc_put_vars_string' was here
 nco_netcdf.h:219: error: conflicting types for 'nc_get_varm_ushort'
 /opt/local/include/netcdf.h:1425: error: previous declaration of
 'nc_get_varm_ushort' was here
 nco_netcdf.h:231: error: conflicting types for 'nc_put_varm_string'
 /opt/local/include/netcdf.h:1460: error: previous declaration of
 'nc_put_varm_string' was here
 nco_netcdf.h:240: error: conflicting types for 'nc_put_att_string'
 /opt/local/include/netcdf.h:916: error: previous declaration of
 'nc_put_att_string' was here
 nco_netcdf.h:245: error: conflicting types for 'nc_get_att_ushort'
 /opt/local/include/netcdf.h:890: error: previous declaration of
 'nc_get_att_ushort' was here
 In file included from nco_att_utl.h:29,
                  from nco_att_utl.c:9:
 nco.h:183:1: warning: "NC_NETCDF4" redefined
 In file included from nco_att_utl.h:25,
                  from nco_att_utl.c:9:
 /opt/local/include/netcdf.h:151:1: warning: this is the location of the
 previous definition
 make[3]: *** [nco_att_utl.lo] Error 1
 make[2]: *** [all-recursive] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all] Error 2
 Error: Target org.macports.build returned: shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_nco/work/nco-3.9.8"
 && make all " returned error 2
 Command output: nco_netcdf.h:171: error: conflicting types for
 'nc_get_var1_ushort'
 /opt/local/include/netcdf.h:1032: error: previous declaration of
 'nc_get_var1_ushort' was here
 nco_netcdf.h:183: error: conflicting types for 'nc_put_var1_string'
 /opt/local/include/netcdf.h:1060: error: previous declaration of
 'nc_put_var1_string' was here
 nco_netcdf.h:187: error: conflicting types for 'nc_get_vara_ushort'
 /opt/local/include/netcdf.h:1147: error: previous declaration of
 'nc_get_vara_ushort' was here
 nco_netcdf.h:199: error: conflicting types for 'nc_put_vara_string'
 /opt/local/include/netcdf.h:1175: error: previous declaration of
 'nc_put_vara_string' was here
 nco_netcdf.h:203: error: conflicting types for 'nc_get_vars_ushort'
 /opt/local/include/netcdf.h:1282: error: previous declaration of
 'nc_get_vars_ushort' was here
 nco_netcdf.h:215: error: conflicting types for 'nc_put_vars_string'
 /opt/local/include/netcdf.h:1317: error: previous declaration of
 'nc_put_vars_string' was here
 nco_netcdf.h:219: error: conflicting types for 'nc_get_varm_ushort'
 /opt/local/include/netcdf.h:1425: error: previous declaration of
 'nc_get_varm_ushort' was here
 nco_netcdf.h:231: error: conflicting types for 'nc_put_varm_string'
 /opt/local/include/netcdf.h:1460: error: previous declaration of
 'nc_put_varm_string' was here
 nco_netcdf.h:240: error: conflicting types for 'nc_put_att_string'
 /opt/local/include/netcdf.h:916: error: previous declaration of
 'nc_put_att_string' was here
 nco_netcdf.h:245: error: conflicting types for 'nc_get_att_ushort'
 /opt/local/include/netcdf.h:890: error: previous declaration of
 'nc_get_att_ushort' was here
 In file included from nco_att_utl.h:29,
                  from nco_att_utl.c:9:
 nco.h:183:1: warning: "NC_NETCDF4" redefined
 In file included from nco_att_utl.h:25,
                  from nco_att_utl.c:9:
 /opt/local/include/netcdf.h:151:1: warning: this is the location of the
 previous definition
 make[3]: *** [nco_att_utl.lo] Error 1
 make[2]: *** [all-recursive] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all] Error 2

 Warning: the following items did not execute (for nco):
 org.macports.activate org.macports.build org.macports.destroot
 org.macports.install
 Error: Status 1 encountered during processing.
 salome stow>
 }}}

--

-- 
Ticket URL: <http://trac.macports.org/ticket/20342#comment:1>
MacPorts <http://www.macports.org/>
Ports system for Mac OS