[MacPorts] #19911: problem in installing py25-mvpa

MacPorts noreply at macports.org
Wed Jun 10 10:52:11 PDT 2009 

#19911: problem in installing py25-mvpa
------------------------------+---------------------------------------------
 Reporter:  guixue@…          |       Owner:  jameskyle@…       
     Type:  defect            |      Status:  new               
 Priority:  Normal            |   Milestone:                    
Component:  ports             |     Version:  1.7.1             
 Keywords:  py25 pymvpa       |        Port:  py25-pymvpa       
------------------------------+---------------------------------------------
Changes (by jmr@…):

  * owner:  macports-tickets@… => jameskyle@…
  * priority:  High => Normal
  * port:  => py25-pymvpa


Old description:

> I am trying to install pymvpa using macports.  following the instruction
> on pymvpa.org, I am using the following command:
>
> sudo port install py25-pymvpa +scipy +pynifti +hcluster +libsvm
>
> > +matplotlib +pywavelet
>
> while most of installed went on smoothly, I met this following problem. I
> wonder if you could help me out. many thanks!
>
> --->  Building py25-pymvpa
> Error: Target org.macports.build returned: shell command "cd
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-pym
>
> vpa/work/py25-pymvpa-current && CFLAGS='-I/opt/local/include
> -L/opt/local/lib' python2.5 setup.py build_ext --with-libsvm" returned
> error 1
> Command output:
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
> function 'void init_svmc()':
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:6569:
> error: 'import_array' was not declared in this scope
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2796:25:
> error: arrayobject.h: No such file or directory
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
> function 'PyObject* svm_node_matrix2numpy_array(svm_node**, int, int)':
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2823:
> error: 'npy_intp' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2823:
> error: expected `;' before 'dims'
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2826:
> error: 'dims' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2826:
> error: 'NPY_DOUBLE' was not declared in this scope
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2826:
> error: 'PyArray_SimpleNew' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
> error: 'PyArrayObject' was not declared in this scope
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
> error: 'a' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
> error: expected primary-expression before ')' token
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
> error: expected `;' before 'array'
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2843:
> error: expected primary-expression before ')' token
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2843:
> error: 'PyArray_Return' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
> function 'PyObject* doubleppcarray2numpy_array(double**, int, int)':
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2854:
> error: 'npy_intp' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2854:
> error: expected `;' before 'dims'
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2857:
> error: 'dims' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2857:
> error: 'NPY_DOUBLE' was not declared in this scope
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2857:
> error: 'PyArray_SimpleNew' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
> error: 'PyArrayObject' was not declared in this scope
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
> error: 'a' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
> error: expected primary-expression before ')' token
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
> error: expected `;' before 'array'
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2873:
> error: expected primary-expression before ')' token
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2873:
> error: 'PyArray_Return' was not declared in this scope
>
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
> function 'void init_svmc()':
> build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:6569:
> error: 'import_array' was not declared in this scope
>
> error: Command "/usr/bin/g++-4.0 -DNDEBUG -g -fwrapv -O3 -Wall
> -I/opt/local/include -L/opt/local/lib -I/usr/include/libsvm-2.0/libsvm
> -I/usr/include/libsvm -I/usr/local/in
> clude/libsvm -I/usr/local/include/libsvm-2.0/libsvm -I/usr/local/include
> -I/opt/local/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5
> /site-packages/numpy/co
>
> re/include
> -I/opt/local/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5
> -c build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp -o
> build/temp.
> macosx-10.5-i386-2.5/build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.o"
> failed with exit status 1

New description:

 I am trying to install pymvpa using macports.  following the instruction
 on pymvpa.org, I am using the following command:
 {{{
 sudo port install py25-pymvpa +scipy +pynifti +hcluster +libsvm
 +matplotlib +pywavelet
 }}}
 while most of installed went on smoothly, I met this following problem. I
 wonder if you could help me out. many thanks!
 {{{
 --->  Building py25-pymvpa
 Error: Target org.macports.build returned: shell command "cd
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-pym

 vpa/work/py25-pymvpa-current && CFLAGS='-I/opt/local/include
 -L/opt/local/lib' python2.5 setup.py build_ext --with-libsvm" returned
 error 1
 Command output:
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
 function 'void init_svmc()':

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:6569:
 error: 'import_array' was not declared in this scope
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2796:25:
 error: arrayobject.h: No such file or directory

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
 function 'PyObject* svm_node_matrix2numpy_array(svm_node**, int, int)':
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2823:
 error: 'npy_intp' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2823:
 error: expected `;' before 'dims'
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2826:
 error: 'dims' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2826:
 error: 'NPY_DOUBLE' was not declared in this scope
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2826:
 error: 'PyArray_SimpleNew' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
 error: 'PyArrayObject' was not declared in this scope
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
 error: 'a' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
 error: expected primary-expression before ')' token
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2829:
 error: expected `;' before 'array'

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2843:
 error: expected primary-expression before ')' token
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2843:
 error: 'PyArray_Return' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
 function 'PyObject* doubleppcarray2numpy_array(double**, int, int)':
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2854:
 error: 'npy_intp' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2854:
 error: expected `;' before 'dims'
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2857:
 error: 'dims' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2857:
 error: 'NPY_DOUBLE' was not declared in this scope
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2857:
 error: 'PyArray_SimpleNew' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
 error: 'PyArrayObject' was not declared in this scope
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
 error: 'a' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
 error: expected primary-expression before ')' token
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2860:
 error: expected `;' before 'array'

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2873:
 error: expected primary-expression before ')' token
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2873:
 error: 'PyArray_Return' was not declared in this scope

 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In
 function 'void init_svmc()':
 build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:6569:
 error: 'import_array' was not declared in this scope

 error: Command "/usr/bin/g++-4.0 -DNDEBUG -g -fwrapv -O3 -Wall
 -I/opt/local/include -L/opt/local/lib -I/usr/include/libsvm-2.0/libsvm
 -I/usr/include/libsvm -I/usr/local/in
 clude/libsvm -I/usr/local/include/libsvm-2.0/libsvm -I/usr/local/include
 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5
 /site-packages/numpy/co

 re/include
 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5
 -c build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp -o
 build/temp.
 macosx-10.5-i386-2.5/build/src.macosx-10.5-i386-2.5/mvpa/clfs/libsvmc/svmc_wrap.o"
 failed with exit status 1
 }}}

--

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Ticket URL: <http://trac.macports.org/ticket/19911#comment:1>
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