[MacPorts] #18959: openmpi 1.3.1 build error

MacPorts noreply at macports.org
Tue Mar 24 15:11:28 PDT 2009


#18959: openmpi 1.3.1 build error
------------------------------------------+---------------------------------
 Reporter:  macsforever2000@…             |       Owner:  mww@…           
     Type:  defect                        |      Status:  new             
 Priority:  Normal                        |   Milestone:  Port Bugs       
Component:  ports                         |     Version:  1.7.0           
 Keywords:                                |        Port:  openmpi         
------------------------------------------+---------------------------------
 I see the following build error with openmpi 1.3.1:

 Running Mac OS X 10.5.6 Intel. Xcode 3.1.2.

 Building with the g95 variant works though.

 {{{
 $ sudo port install openmpi
 --->  Fetching openmpi
 --->  Verifying checksum(s) for openmpi
 --->  Extracting openmpi
 --->  Configuring openmpi
 --->  Building openmpi
 Error: Target org.macports.build returned: shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build"
 && make all " returned error 2
 Command output: /bin/sh ../../../../libtool --tag=CC   --mode=link
 /usr/bin/gcc-4.0  -DNDEBUG -O2 -finline-functions -fno-strict-aliasing
 -fvisibility=hidden -module -avoid-version -export-dynamic
 -L/opt/local/lib  -o mca_routed_linear.la -rpath /opt/local/lib/openmpi
 routed_linear.lo routed_linear_component.lo  -lutil
 libtool: link: ar cru .libs/mca_routed_linear.a  routed_linear.o
 routed_linear_component.o
 libtool: link: ranlib .libs/mca_routed_linear.a
 libtool: link: ( cd ".libs" && rm -f "mca_routed_linear.la" && ln -s
 "../mca_routed_linear.la" "mca_routed_linear.la" )
 Making all in tools/orte-checkpoint
 make[2]: Nothing to be done for `all'.
 Making all in tools/orte-clean
 depbase=`echo orte-clean.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
         /usr/bin/gcc-4.0 -DHAVE_CONFIG_H -I.
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
 /orte-clean -I../../../opal/include -I../../../orte/include
 -I../../../ompi/include
 -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1
 -I../../..
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/opal/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/ompi/include
 -I/opt/local/include -D_REENTRANT  -DNDEBUG -O2 -finline-functions -fno-
 strict-aliasing  -fvisibility=hidden -MT orte-clean.o -MD -MP -MF
 $depbase.Tpo -c -o orte-clean.o
 /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
 /orte-clean/orte-clean.c &&\
         mv -f $depbase.Tpo $depbase.Po
 /bin/sh ../../../libtool --tag=CC   --mode=link /usr/bin/gcc-4.0  -DNDEBUG
 -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden  -export-
 dynamic -L/opt/local/lib  -o orte-clean orte-clean.o ../../../orte
 /libopen-rte.la -lutil
 libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
 strict-aliasing -fvisibility=hidden -o orte-clean orte-clean.o
 -L/opt/local/lib ../../../orte/.libs/libopen-rte.a
 /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build/opal/.libs
 /libopen-pal.a -lutil
 Creating orte-clean.1 man page...
 Making all in tools/orte-iof
 depbase=`echo orte-iof.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
         /usr/bin/gcc-4.0 -DHAVE_CONFIG_H -I.
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
 /orte-iof -I../../../opal/include -I../../../orte/include
 -I../../../ompi/include
 -I../../../opal/mca/paffinity/linux/plpa/src/libplpa
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1
 -I../../..
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/opal/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/include
 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/ompi/include
 -I/opt/local/include -D_REENTRANT  -DNDEBUG -O2 -finline-functions -fno-
 strict-aliasing  -fvisibility=hidden -MT orte-iof.o -MD -MP -MF
 $depbase.Tpo -c -o orte-iof.o
 /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
 /orte-iof/orte-iof.c &&\
         mv -f $depbase.Tpo $depbase.Po
 /bin/sh ../../../libtool --tag=CC   --mode=link /usr/bin/gcc-4.0  -DNDEBUG
 -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden  -export-
 dynamic -L/opt/local/lib  -o orte-iof orte-iof.o ../../../orte/libopen-
 rte.la -lutil
 libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
 strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o
 -L/opt/local/lib ../../../orte/.libs/libopen-rte.a
 /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build/opal/.libs
 /libopen-pal.a -lutil
 Undefined symbols:
   "_orte_iof", referenced from:
       _orte_iof$non_lazy_ptr in orte-iof.o
   "_orte_routed", referenced from:
       _orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o)
       _orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)
 ld: symbol(s) not found
 collect2: ld returned 1 exit status
 make[2]: *** [orte-iof] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all-recursive] Error 1

 Error: Status 1 encountered during processing.
 }}}

-- 
Ticket URL: <http://trac.macports.org/ticket/18959>
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