[MacPorts] #18959: openmpi 1.3.1 build error
MacPorts
noreply at macports.org
Tue Mar 24 15:11:28 PDT 2009
#18959: openmpi 1.3.1 build error
------------------------------------------+---------------------------------
Reporter: macsforever2000@… | Owner: mww@…
Type: defect | Status: new
Priority: Normal | Milestone: Port Bugs
Component: ports | Version: 1.7.0
Keywords: | Port: openmpi
------------------------------------------+---------------------------------
I see the following build error with openmpi 1.3.1:
Running Mac OS X 10.5.6 Intel. Xcode 3.1.2.
Building with the g95 variant works though.
{{{
$ sudo port install openmpi
---> Fetching openmpi
---> Verifying checksum(s) for openmpi
---> Extracting openmpi
---> Configuring openmpi
---> Building openmpi
Error: Target org.macports.build returned: shell command " cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build"
&& make all " returned error 2
Command output: /bin/sh ../../../../libtool --tag=CC --mode=link
/usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-strict-aliasing
-fvisibility=hidden -module -avoid-version -export-dynamic
-L/opt/local/lib -o mca_routed_linear.la -rpath /opt/local/lib/openmpi
routed_linear.lo routed_linear_component.lo -lutil
libtool: link: ar cru .libs/mca_routed_linear.a routed_linear.o
routed_linear_component.o
libtool: link: ranlib .libs/mca_routed_linear.a
libtool: link: ( cd ".libs" && rm -f "mca_routed_linear.la" && ln -s
"../mca_routed_linear.la" "mca_routed_linear.la" )
Making all in tools/orte-checkpoint
make[2]: Nothing to be done for `all'.
Making all in tools/orte-clean
depbase=`echo orte-clean.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
/usr/bin/gcc-4.0 -DHAVE_CONFIG_H -I.
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
/orte-clean -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1
-I../../..
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/opal/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/ompi/include
-I/opt/local/include -D_REENTRANT -DNDEBUG -O2 -finline-functions -fno-
strict-aliasing -fvisibility=hidden -MT orte-clean.o -MD -MP -MF
$depbase.Tpo -c -o orte-clean.o
/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
/orte-clean/orte-clean.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/gcc-4.0 -DNDEBUG
-O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -export-
dynamic -L/opt/local/lib -o orte-clean orte-clean.o ../../../orte
/libopen-rte.la -lutil
libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
strict-aliasing -fvisibility=hidden -o orte-clean orte-clean.o
-L/opt/local/lib ../../../orte/.libs/libopen-rte.a
/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build/opal/.libs
/libopen-pal.a -lutil
Creating orte-clean.1 man page...
Making all in tools/orte-iof
depbase=`echo orte-iof.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
/usr/bin/gcc-4.0 -DHAVE_CONFIG_H -I.
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
/orte-iof -I../../../opal/include -I../../../orte/include
-I../../../ompi/include
-I../../../opal/mca/paffinity/linux/plpa/src/libplpa
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1
-I../../..
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/opal/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/include
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/ompi/include
-I/opt/local/include -D_REENTRANT -DNDEBUG -O2 -finline-functions -fno-
strict-aliasing -fvisibility=hidden -MT orte-iof.o -MD -MP -MF
$depbase.Tpo -c -o orte-iof.o
/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools
/orte-iof/orte-iof.c &&\
mv -f $depbase.Tpo $depbase.Po
/bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/gcc-4.0 -DNDEBUG
-O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -export-
dynamic -L/opt/local/lib -o orte-iof orte-iof.o ../../../orte/libopen-
rte.la -lutil
libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-
strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o
-L/opt/local/lib ../../../orte/.libs/libopen-rte.a
/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build/opal/.libs
/libopen-pal.a -lutil
Undefined symbols:
"_orte_iof", referenced from:
_orte_iof$non_lazy_ptr in orte-iof.o
"_orte_routed", referenced from:
_orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o)
_orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[2]: *** [orte-iof] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1
Error: Status 1 encountered during processing.
}}}
--
Ticket URL: <http://trac.macports.org/ticket/18959>
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