[MacPorts] #25619: atlas build failure (was: shell command fail while installing py26-numpy)

[MacPorts]

#25619: atlas build failure
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 Reporter:  bertagna@…              |       Owner:  jameskyle@…           
     Type:  defect                  |      Status:  new                   
 Priority:  Normal                  |   Milestone:                        
Component:  ports                   |     Version:  1.9.1                 
 Keywords:                          |        Port:  atlas                 
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Changes (by jmr@…):

  * owner:  macports-tickets@… => jameskyle@…
  * port:  => atlas
  * milestone:  MacPorts 2.0.0 =>


Old description:

> hello, I'm trying to install a bioinformatics software program on my
> MacBook (Snow Lepord, 10.6.4) called STAMP (Statistical Analysis of
> Metagenomics Profiles). One of the installations required is py26-numpy.
> I entered the following;
>
> c-67-170-178-177:~ anthonybertagnolli$ sudo port install py26-numpy
> Password:
> --->  Computing dependencies for py26-numpy
> --->  Dependencies to be installed: atlas fftw-3 py26-nose
> --->  Building atlas
> Error: Target org.macports.build returned: shell command failed
> Log for atlas is at:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
> Error: The following dependencies failed to build: atlas fftw-3 py26-nose
> Error: Status 1 encountered during processing.
> To report a bug, see <http://guide.macports.org/#project.tickets>
>
> Not sure what the appropriate action is at this point, would appreciate
> any help in getting past a shell command failure.  I have been using X11
> for most of my installation work, tried to install numpy using the
> terminal, but I got the same the result. Not sure if this even matters,
> just a piece of information that i thought might be useful. Thanks,
>
> -Anthony

New description:

 hello, I'm trying to install a bioinformatics software program on my
 MacBook (Snow Lepord, 10.6.4) called STAMP (Statistical Analysis of
 Metagenomics Profiles). One of the installations required is py26-numpy. I
 entered the following;
 {{{
 c-67-170-178-177:~ anthonybertagnolli$ sudo port install py26-numpy
 Password:
 --->  Computing dependencies for py26-numpy
 --->  Dependencies to be installed: atlas fftw-3 py26-nose
 --->  Building atlas
 Error: Target org.macports.build returned: shell command failed
 Log for atlas is at:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
 Error: The following dependencies failed to build: atlas fftw-3 py26-nose
 Error: Status 1 encountered during processing.
 To report a bug, see <http://guide.macports.org/#project.tickets>
 }}}
 Not sure what the appropriate action is at this point, would appreciate
 any help in getting past a shell command failure.  I have been using X11
 for most of my installation work, tried to install numpy using the
 terminal, but I got the same the result. Not sure if this even matters,
 just a piece of information that i thought might be useful. Thanks,

 -Anthony

--

Comment:

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-- 
Ticket URL: <http://trac.macports.org/ticket/25619#comment:2>
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