[MacPorts] #25616: Problem with ncbi_tools

[MacPorts]

#25616: Problem with ncbi_tools
----------------------------+-----------------------------------------------
 Reporter:  xave@…          |       Owner:  mike.thon@…        
     Type:  defect          |      Status:  new                
 Priority:  Normal          |   Milestone:                     
Component:  ports           |     Version:  1.9.1              
 Keywords:                  |        Port:  ncbi_tools         
----------------------------+-----------------------------------------------
Changes (by jmr@…):

  * owner:  macports-tickets@… => mike.thon@…
  * port:  => ncbi_tools


Old description:

> When I install ncbi_tools I receive the following:
>
> sudo port -v -d install ncbi_tools
> DEBUG: Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/ncbi_tools
> DEBUG: OS darwin/9.8.0 (Mac OS X 10.5) arch i386
> DEBUG: org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-
> existing procedure. Target override will not be provided
> DEBUG: universal_variant is false, so not adding the default universal
> variant
> DEBUG: Starting logging for ncbi_tools
> --->  Computing dependencies for ncbi_tools
> DEBUG: Executing org.macports.main (ncbi_tools)
> DEBUG: Skipping completed org.macports.fetch (ncbi_tools)
> DEBUG: Skipping completed org.macports.checksum (ncbi_tools)
> DEBUG: Skipping completed org.macports.extract (ncbi_tools)
> DEBUG: Skipping completed org.macports.patch (ncbi_tools)
> DEBUG: Skipping completed org.macports.configure (ncbi_tools)
> --->  Building ncbi_tools
> DEBUG: build phase started at Sat Jul 10 16:30:02 CEST 2010
> DEBUG: Executing org.macports.build (ncbi_tools)
> DEBUG: Environment: CPATH='/opt/local/include'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/.CC_PRINT_OPTIONS'
> LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
> MACOSX_DEPLOYMENT_TARGET='10.5'
> DEBUG: Assembled command: 'cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/"
> && './ncbi/make/makedis.csh' -j2'
> Unable to find the file -j2
> shell command " cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/"
> && './ncbi/make/makedis.csh' -j2 " returned error 1
> Error: Target org.macports.build returned: shell command failed
> DEBUG: Backtrace: shell command failed
>     while executing
> "command_exec build"
>     (procedure "portbuild::build_main" line 8)
>     invoked from within
> "$procedure $targetname"
> Warning: the following items did not execute (for ncbi_tools):
> org.macports.activate org.macports.build org.macports.destroot
> org.macports.install
> Log for ncbi_tools is at:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/main.log
> Error: Status 1 encountered during processing.
> To report a bug, see <http://guide.macports.org/#project.tickets>
>
> Thanks

New description:

 When I install ncbi_tools I receive the following:
 {{{
 sudo port -v -d install ncbi_tools
 DEBUG: Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/ncbi_tools
 DEBUG: OS darwin/9.8.0 (Mac OS X 10.5) arch i386
 DEBUG: org.macports.load registered provides 'load', a pre-existing
 procedure. Target override will not be provided
 DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-
 existing procedure. Target override will not be provided
 DEBUG: universal_variant is false, so not adding the default universal
 variant
 DEBUG: Starting logging for ncbi_tools
 --->  Computing dependencies for ncbi_tools
 DEBUG: Executing org.macports.main (ncbi_tools)
 DEBUG: Skipping completed org.macports.fetch (ncbi_tools)
 DEBUG: Skipping completed org.macports.checksum (ncbi_tools)
 DEBUG: Skipping completed org.macports.extract (ncbi_tools)
 DEBUG: Skipping completed org.macports.patch (ncbi_tools)
 DEBUG: Skipping completed org.macports.configure (ncbi_tools)
 --->  Building ncbi_tools
 DEBUG: build phase started at Sat Jul 10 16:30:02 CEST 2010
 DEBUG: Executing org.macports.build (ncbi_tools)
 DEBUG: Environment: CPATH='/opt/local/include'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/.CC_PRINT_OPTIONS'
 LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
 MACOSX_DEPLOYMENT_TARGET='10.5'
 DEBUG: Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/"
 && './ncbi/make/makedis.csh' -j2'
 Unable to find the file -j2
 shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/"
 && './ncbi/make/makedis.csh' -j2 " returned error 1
 Error: Target org.macports.build returned: shell command failed
 DEBUG: Backtrace: shell command failed
     while executing
 "command_exec build"
     (procedure "portbuild::build_main" line 8)
     invoked from within
 "$procedure $targetname"
 Warning: the following items did not execute (for ncbi_tools):
 org.macports.activate org.macports.build org.macports.destroot
 org.macports.install
 Log for ncbi_tools is at:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/main.log
 Error: Status 1 encountered during processing.
 To report a bug, see <http://guide.macports.org/#project.tickets>
 }}}
 Thanks

--

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-- 
Ticket URL: <http://trac.macports.org/ticket/25616#comment:1>
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