[MacPorts] #25160: ghemical gets built, but is unable to run

[MacPorts]

#25160: ghemical gets built, but is unable to run
---------------------------------------+------------------------------------
 Reporter:  baris_malcioglu@…          |       Owner:  simon@…           
     Type:  defect                     |      Status:  new               
 Priority:  Normal                     |   Milestone:                    
Component:  ports                      |     Version:  1.8.2             
 Keywords:                             |        Port:  ghemical          
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Changes (by jmr@…):

  * owner:  macports-tickets@… => simon@…
  * port:  => ghemical


Old description:

> >ghemical
>
> Xlib:  extension "RANDR" missing on display "/tmp/launch-VeU1pV/org.x:0".
>
> OpenGL extension version - 1.2
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/builder/amino.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/builder/nucleic.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/default/atomtypes.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/default/parameters1.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/default/parameters2.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/default/parameters3.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/default/parameters4.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/tripos52/atomtypes.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters1.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters2.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters3.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters4.txt
> DEBUG ; preparing to open file
> /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters5.txt
> added local light.
>
> OpenGL visual configurations :
>
> gdk_gl_config_is_rgba (glconfig) = TRUE
> gdk_gl_config_is_double_buffered (glconfig) = TRUE
> gdk_gl_config_is_stereo (glconfig) = FALSE
> gdk_gl_config_has_alpha (glconfig) = FALSE
> gdk_gl_config_has_depth_buffer (glconfig) = TRUE
> gdk_gl_config_has_stencil_buffer (glconfig) = FALSE
> gdk_gl_config_has_accum_buffer (glconfig) = TRUE
>
> dyld: lazy symbol binding failed: Symbol not found: _GTK_WIDGET_NO_WINDOW
>   Referenced from: /opt/local/lib/libgtkglext-x11-1.0.0.dylib
>   Expected in: flat namespace
>
> dyld: Symbol not found: _GTK_WIDGET_NO_WINDOW
>   Referenced from: /opt/local/lib/libgtkglext-x11-1.0.0.dylib
>   Expected in: flat namespace
>
> Trace/BPT trap

New description:

 {{{
 >ghemical

 Xlib:  extension "RANDR" missing on display "/tmp/launch-VeU1pV/org.x:0".

 OpenGL extension version - 1.2
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/builder/amino.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/builder/nucleic.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/default/atomtypes.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/default/parameters1.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/default/parameters2.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/default/parameters3.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/default/parameters4.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/tripos52/atomtypes.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters1.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters2.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters3.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters4.txt
 DEBUG ; preparing to open file
 /opt/local/share/libghemical/2.98/param_mm/tripos52/parameters5.txt
 added local light.

 OpenGL visual configurations :

 gdk_gl_config_is_rgba (glconfig) = TRUE
 gdk_gl_config_is_double_buffered (glconfig) = TRUE
 gdk_gl_config_is_stereo (glconfig) = FALSE
 gdk_gl_config_has_alpha (glconfig) = FALSE
 gdk_gl_config_has_depth_buffer (glconfig) = TRUE
 gdk_gl_config_has_stencil_buffer (glconfig) = FALSE
 gdk_gl_config_has_accum_buffer (glconfig) = TRUE

 dyld: lazy symbol binding failed: Symbol not found: _GTK_WIDGET_NO_WINDOW
   Referenced from: /opt/local/lib/libgtkglext-x11-1.0.0.dylib
   Expected in: flat namespace

 dyld: Symbol not found: _GTK_WIDGET_NO_WINDOW
   Referenced from: /opt/local/lib/libgtkglext-x11-1.0.0.dylib
   Expected in: flat namespace

 Trace/BPT trap
 }}}

--

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Ticket URL: <http://trac.macports.org/ticket/25160#comment:1>
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