[MacPorts] #25312: gnudatalanguage build fails due to libtool "version mismatch error"
MacPorts
noreply at macports.org
Mon Jun 21 08:30:15 PDT 2010
#25312: gnudatalanguage build fails due to libtool "version mismatch error"
------------------------------------+---------------------------------------
Reporter: davidagalvan@… | Owner: takeshi@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 1.9.0
Keywords: | Port: gnudatalanguage
------------------------------------+---------------------------------------
Comment(by davidagalvan@…):
I ran the suggested commands. Same problem persists: "Shell command
failed", and then in the logfile I see the version mismatch error again.
The selfupdate, upgrade libtool, and clean gnudatalanguage commands seemed
to work with no reported problems.
But the install gnudatalanguage command failed at the same place. Here is
the command line response for that last part:
{{{
dgalvan-09153112037:~ dgalvan$ port version
Version: 1.9.1
dgalvan-09153112037:~ dgalvan$ sudo port install gnudatalanguage
---> Computing dependencies for gnudatalanguage
---> Building gnudatalanguage
Error: Target org.macports.build returned: shell command failed
Log for gnudatalanguage is at:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_gnudatalanguage/main.log
Error: Status 1 encountered during processing.
To report a bug, see <http://guide.macports.org/#project.tickets>
}}}
And now, the last part of that logfile:
{{{
:msg:main ---> Building gnudatalanguage:debug:build build phase started
at Mon Jun 21 08:20:38 PDT 2010:debug:build Executing org.macports.build
(gnudatalanguage):debug:build Environment: CPATH='/opt/local/include'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_gnudatalanguage/work/.CC_PRINT_OPTIONS'
LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
MACOSX_DEPLOYMENT_TARGET='10.6':debug:build Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_gnudatalanguage/work/gdl-0.9rc4"
&& /usr/bin/make -j2 all':info:build /usr/bin/make all-
recursive:info:build Making all in src:info:build Making all in
antlr:info:build make[3]: Nothing to be done for `all'.:info:build Making
all in pro:info:build Making all in dicom:info:build make[4]: Nothing to
be done for `all'.:info:build make[4]: Nothing to be done for `all-
am'.:info:build /bin/sh ../libtool --tag=CXX --mode=link
/usr/bin/g++-4.2 -pipe -O2 -arch x86_64 -L/opt/local/lib -arch x86_64
-L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib -o
gdl gdl-assocdata.o gdl-basic_fun_cl.o gdl-basic_fun.o gdl-basic_fun_jmg.o
gdl-basic_op.o gdl-basic_pro.o gdl-basic_pro_jmg.o gdl-CFMTLexer.o gdl-
color.o gdl-convert2.o gdl-datatypes.o gdl-dcommon.o gdl-dcompiler.o gdl-
default_io.o gdl-dinterpreter.o gdl-dnode.o gdl-dpro.o gdl-dstructdesc.o
gdl-dstructgdl.o gdl-dvar.o gdl-envt.o gdl-extrat.o gdl-FMTIn.o gdl-
FMTLexer.o gdl-fmtnode.o gdl-FMTOut.o gdl-FMTParser.o gdl-
gdleventhandler.o gdl-gdlexception.o gdl-gdlgstream.o gdl-GDLInterpreter.o
gdl-GDLLexer.o gdl-GDLParser.o gdl-gdlpsstream.o gdl-gdlsvgstream.o gdl-
gdlpython.o gdl-GDLTreeParser.o gdl-gdlwinstream.o gdl-gdlxstream.o gdl-
getfmtast.o gdl-graphics.o gdl-gsl_fun.o gdl-ifmt.o gdl-initct.o gdl-
initsysvar.o gdl-io.o gdl-libinit_cl.o gdl-libinit.o gd
l-libinit_jmg.o gdl-math_fun.o gdl-math_fun_jmg.o gdl-math_utl.o gdl-
ncdf_att_cl
.o gdl-ncdf_cl.o gdl-ncdf_dim_cl.o gdl-ncdf_var_cl.o gdl-new.o gdl-
objects.o gdl
-ofmt.o gdl-math_fun_ac.o gdl-libinit_ac.o gdl-math_fun_gm.o gdl-
libinit_gm.o gd
l-math_fun_ng.o gdl-libinit_ng.o gdl-plotting.o gdl-print.o gdl-
print_tree.o gdl
-read.o gdl-str.o gdl-terminfo.o gdl-topython.o gdl-typetraits.o gdl-
hdf_fun.o g
dl-hdf_pro.o gdl-magick_cl.o gdl-gdlwidget.o gdl-widget.o gdl-basegdl.o
gdl-hdf5
_fun.o gdl-libinit_mes.o gdl-file.o gdl-image.o gdl-gdljournal.o gdl-
convol.o gd
l-convol_inc0.o gdl-convol_inc1.o gdl-convol_inc2.o gdl-sigfpehandler.o
gdl-gdlz
stream.o gdl-arrayindex.o gdl-fftw.o gdl-mpi.o gdl-plot3d_nr.o gdl-grib.o
gdl-pr
ognode.o gdl-prognodeexpr.o gdl-gdl.o ../src/antlr/libantlr.a
-L/usr/X11R6/lib64
-L/usr/X11R6/lib -lX11 -lmfhdf -lgslcblas -lgsl -L/opt/local/lib
-L/opt/local -
lncurses -lpng -lopenjpeg -L/opt/local/lib -lreadline -lz -L/opt/local/lib
-lgsl
-lgslcblas -L/opt/local/lib -lplplotd -lplplotcxxd -L/opt/local/lib
-lMagick++
-lMagickWand -lMagickCore -llcms -ltiff -lfreetype -ljpeg -L/opt/local/lib
-lfon
tconfig -lexpat -lfreetype -lz -liconv -lXext -lSM -lICE -lX11 -lXt -lbz2
-lz -l
m -lclparser -Wl,-framework,OpenCL
-L/System/Library/Frameworks/OpenCL.framework
/Versions/A/Libraries -lm -lpthread -lltdl -L/opt/local/lib -lnetcdf
-L/opt/loca
l/lib -L/opt/local/lib/hdf -lmfhdf -ldf -ljpeg -lz -lsz -L/opt/local/lib
-L/opt/
local/lib/hdf -L/opt/local/lib/hdf5 -lhdf5 -L/opt/local/lib -lfftw3
-L/opt/local
/lib -lfftw3f -L/opt/local/lib -lproj4 -L/opt/local/lib -ludunits2
-L/opt/local/
lib -lgrib_api -ljasper
:info:build libtool: Version mismatch error. This is libtool 2.2.6b, but
the
:info:build libtool: definition of this LT_INIT comes from libtool 2.2.10.
:info:build libtool: You should recreate aclocal.m4 with macros from
libtool 2.2
.6b
:info:build libtool: and run autoconf again.
:info:build make[3]: *** [gdl] Error 63
:info:build make[2]: *** [all-recursive] Error 1
:info:build make[1]: *** [all-recursive] Error 1
:info:build make: *** [all] Error 2
:info:build shell command " cd
"/opt/local/var/macports/build/_opt_local_var_mac
ports_sources_rsync.macports.org_release_ports_math_gnudatalanguage/work/gdl-0.9
rc4" && /usr/bin/make -j2 all " returned error 2
:error:build Target org.macports.build returned: shell command failed
:debug:build Backtrace: shell command failed
while executing
"command_exec build"
(procedure "portbuild::build_main" line 8)
invoked from within
"$procedure $targetname"
:info:build Warning: the following items did not execute (for
gnudatalanguage): org.macports.activate org.macports.build
org.macports.destroot org.macports.install
:notice:build Log for gnudatalanguage is at:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_gnudatalanguage/main.log
}}}
I wonder. . . is it possible that I have two versions of libtool installed
in two different places? When I run the command, whereis libtool I get:
{{{
dgalvan-09153112037:~ dgalvan$ whereis libtool
/usr/bin/libtool
}}}
And, MacPorts seem to be installing everything in another directory.
Should I remove the libtool version in /usr/bin?
Also, I had first tried to install gnudatalanguage from HPC, here:
http://hpc.sourceforge.net/, which I think put everything in /usr/local.
Perhaps the two installs are interfering with each other? Is there a way
I can uninstall the HPC-installed gnudatalanguage?
Thanks so much for your help!
--
Ticket URL: <http://trac.macports.org/ticket/25312#comment:3>
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