[MacPorts] #28507: atlas: Undefined symbols _ATL_DecAtomicCount (was: unable to upgrade to atlas 3.9.37_0)

[MacPorts]

#28507: atlas: Undefined symbols _ATL_DecAtomicCount
----------------------------------+-----------------------------------------
  Reporter:  f.calboli@…          |       Owner:  macports-tickets@…                   
      Type:  defect               |      Status:  closed                               
  Priority:  Normal               |   Milestone:                                       
 Component:  ports                |     Version:  1.9.2                                
Resolution:  duplicate            |    Keywords:                                       
      Port:  atlas                |  
----------------------------------+-----------------------------------------
Changes (by ryandesign@…):

  * priority:  High => Normal


Old description:

> unable to upgrade to atlas 3.9.37_0  from atlas unable to upgrade to
> atlas 3.9.35_0:
>
> --->  Building atlas
> Error: Target org.macports.build returned: shell command failed (see log
> for details)
> Log for atlas is at:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
> Error: Unable to upgrade port: 1
> To report a bug, see <http://guide.macports.org/#project.tickets>
>

> ~$ tail  -n 20
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
> :info:build
> :info:build
> :info:build ATLAS install complete.  Examine
> :info:build ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
> :info:build /usr/bin/make clean
> :info:build rm -rf *.dSYM
> :info:build rm -rf *.o x* config?.out *core*
> :debug:build Executing proc-post-org.macports.build-build-0
> :info:build Undefined symbols:
> :info:build   "_ATL_DecAtomicCount", referenced from:
> :info:build       _ATL_dyntlaunch in libatlas.a(ATL_dyntlaunch.o)
> :info:build       _ATL_dyntlaunch in libatlas.a(ATL_dyntlaunch.o)
> :info:build ld: symbol(s) not found
> :info:build shell command "cd
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.9.37/build/lib
> &&  ( test ! -e libatlas.a ||  /usr/bin/ld -arch x86_64 -dynamic -dylib
> -single_module -dead_strip  -x -all_load -L.
> -L/opt/local/lib/gcc44/x86_64  -L/opt/local/lib/gcc44 -ldylib1.o
> -dylib_install_name /opt/local/lib/libatlas.dylib  libatlas.a -o
> libatlas.dylib  -lSystem  )" returned error 1
> :error:build Target org.macports.build returned: shell command failed
> (see log for details)
> :debug:build Backtrace: shell command failed (see log for details)
>     while executing
> "$post $targetname"
> :info:build Warning: the following items did not execute (for atlas):
> org.macports.destroot org.macports.build
> :notice:build Log for atlas is at:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log

New description:

 unable to upgrade to atlas 3.9.37_0  from atlas unable to upgrade to atlas
 3.9.35_0:

 {{{
 --->  Building atlas
 Error: Target org.macports.build returned: shell command failed (see log
 for details)
 Log for atlas is at:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
 Error: Unable to upgrade port: 1
 To report a bug, see <http://guide.macports.org/#project.tickets>
 }}}

 {{{
 ~$ tail  -n 20
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
 :info:build
 :info:build
 :info:build ATLAS install complete.  Examine
 :info:build ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
 :info:build /usr/bin/make clean
 :info:build rm -rf *.dSYM
 :info:build rm -rf *.o x* config?.out *core*
 :debug:build Executing proc-post-org.macports.build-build-0
 :info:build Undefined symbols:
 :info:build   "_ATL_DecAtomicCount", referenced from:
 :info:build       _ATL_dyntlaunch in libatlas.a(ATL_dyntlaunch.o)
 :info:build       _ATL_dyntlaunch in libatlas.a(ATL_dyntlaunch.o)
 :info:build ld: symbol(s) not found
 :info:build shell command "cd
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.9.37/build/lib
 &&  ( test ! -e libatlas.a ||  /usr/bin/ld -arch x86_64 -dynamic -dylib
 -single_module -dead_strip  -x -all_load -L. -L/opt/local/lib/gcc44/x86_64
 -L/opt/local/lib/gcc44 -ldylib1.o  -dylib_install_name
 /opt/local/lib/libatlas.dylib  libatlas.a -o libatlas.dylib  -lSystem  )"
 returned error 1
 :error:build Target org.macports.build returned: shell command failed (see
 log for details)
 :debug:build Backtrace: shell command failed (see log for details)
     while executing
 "$post $targetname"
 :info:build Warning: the following items did not execute (for atlas):
 org.macports.destroot org.macports.build
 :notice:build Log for atlas is at:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
 }}}

--

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Ticket URL: <https://trac.macports.org/ticket/28507#comment:5>
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