[MacPorts] #28549: py26-h5py @1.3.1 Configure error - build failure

[MacPorts]

#28549: py26-h5py @1.3.1 Configure error - build failure
-------------------------------------+--------------------------------------
 Reporter:  bobby.mendoza@…          |       Owner:  macports-tickets@…                   
     Type:  defect                   |      Status:  new                                  
 Priority:  Normal                   |   Milestone:                                       
Component:  ports                    |     Version:  1.9.2                                
 Keywords:                           |        Port:  py26-h5py                            
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 I am running Mac OS 10.6.6 on a fresh macports installation. I have
 installed hdf5-18 as follows:
 {{{
 sudo port installed hdf5-18
 The following ports are currently installed:
   hdf5-18 @1.8.6_1+gcc45 (active)
 }}}
 Here is my output of the build fail:
 {{{
 > sudo port -v install py26-h5py
 --->  Computing dependencies for py26-h5py.
 --->  Fetching py26-h5py
 --->  Verifying checksum(s) for py26-h5py
 --->  Checksumming h5py-1.3.1.tar.gz
 --->  Extracting py26-h5py
 --->  Extracting h5py-1.3.1.tar.gz
 --->  Configuring py26-h5py
 Undefined symbols:
   "_inflateEnd", referenced from:
       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
   "_SZ_encoder_enabled", referenced from:
       _H5Z_init_interface in libhdf5.a(H5Z.o)
   "_compress2", referenced from:
       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
   "_inflateInit_", referenced from:
       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
   "_SZ_BufftoBuffDecompress", referenced from:
       _H5Z_filter_szip in libhdf5.a(H5Zszip.o)
   "_SZ_BufftoBuffCompress", referenced from:
       _H5Z_filter_szip in libhdf5.a(H5Zszip.o)
   "_inflate", referenced from:
       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
 ld: symbol(s) not found
 collect2: ld returned 1 exit status
 ******************************************
 Configure: Autodetecting HDF5 settings...
     Custom HDF5 dir:       /opt/local
     Custom API level:      (1, 8)

     Failed to compile HDF5 test program.  Please check to make sure:

     * You have a C compiler installed
     * A development version of Python is installed (including header
 files)
     * A development version of HDF5 is installed (including header files)
     * If HDF5 is not in a default location, supply the argument
 --hdf5=<path>
 ******************************************
 error: command 'cc' failed with exit status 1
 shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-h5py/work/h5py-1.3.1"
 &&
 /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6
 setup.py configure --api=18 --hdf5=/opt/local " returned error 1
 Error: Target org.macports.configure returned: configure failure: shell
 command failed (see log for details)
 Warning: the following items did not execute (for py26-h5py):
 org.macports.activate org.macports.configure org.macports.build
 org.macports.destroot org.macports.install
 Log for py26-h5py is at:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-h5py/main.log
 Error: Status 1 encountered during processing.
 To report a bug, see <http://guide.macports.org/#project.tickets>
 }}}
 I have attached the full log file.

-- 
Ticket URL: <https://trac.macports.org/ticket/28549>
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