[MacPorts] #30342: Update ARB for Lion (OS X 10.7) and Xcode 4

[MacPorts]

#30342: Update ARB for Lion (OS X 10.7) and Xcode 4
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 Reporter:  matt.cottrell@…           |       Owner:  macports-tickets@…                   
     Type:  update                    |      Status:  new                                  
 Priority:  Normal                    |   Milestone:                                       
Component:  ports                     |     Version:  2.0.0                                
 Keywords:  lion haspatch maintainer  |        Port:  arb                                  
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Comment(by matt.cottrell@…):

 Replying to [comment:10 ryandesign@…]:
 > It does not build on Snow Leopard with Xcode 3.2.6. I'll attach the
 complete log.
 >
 > Also, there are some reinplaces that (now?) do nothing that perhaps need
 to be revised or removed.

 That is very strange.  The proposed changes build ARB for me on Snow
 Leopard with Xcode 3.2.6.  Fortunately, I do have another machine running
 that set up.

 The error you are getting is nothing I've seen before and nowhere near
 where we are patching.

 {{{
 :info:build -------------------- Checking bin/arb_ntree
 :info:build Target 'bin/arb_ntree' not found
 :info:build -> rebuilding bin/arb_ntree (Wed Dec 31 17:59:59 1969)
 :info:build Link bin/arb_ntree
 :info:build /usr/bin/g++-4.2   -arch x86_64   -o bin/arb_ntree
 -L/opt/local/var/macports/build/_Users_rschmidt_macports_dports_science_arb/work/arbsrc_6779/LIBLINK
 PROBE_COM/client.a ARB_GDE/ARB_GDE.a AWTC/AWTC.a AWTI/AWTI.a GENOM/GENOM.a
 GENOM_IMPORT/GENOM_IMPORT.a MERGE/MERGE.a MULTI_PROBE/MULTI_PROBE.a
 NTREE/NTREE.a PRIMER_DESIGN/PRIMER_DESIGN.a PROBE_DESIGN/PROBE_DESIGN.a
 SEQ_QUALITY/SEQ_QUALITY.a SERVERCNTRL/SERVERCNTRL.a SL/AW_NAME/AW_NAME.a
 SL/DB_SCANNER/DB_SCANNER.a SL/FILE_BUFFER/FILE_BUFFER.a SL/HELIX/HELIX.a
 SL/REGEXPR/REGEXPR.a SL/TREE_READ/TREE_READ.a SL/TREE_WRITE/TREE_WRITE.a
 STAT/STAT.a XML/XML.a  -lARBDB  -lstdc++ -lAW -lAWT -L/opt/local/lib -lXm
 -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi -lGLU -lGL
 -Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
 :info:build ld: in AWTC/AWTC.a, section not found for address 0x0000689E
 :info:build collect2: ld returned 1 exit status
 :info:build make[2]: *** [bin/arb_ntree] Error 1
 :info:build make[1]: *** [arb] Error 2
 :info:build make: *** [all] Error 2
 }}}

 It's such a strange error that I suspect a corrupted source file.  I'm
 reaching here because I cannot reproduce your failure.  Can you download a
 fresh copy of the source and try again?

 We'll deal with the reinplaces after all is well with the build.  Thanks
 for the heads up.

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Ticket URL: <https://trac.macports.org/ticket/30342#comment:11>
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