[MacPorts] #29345: PyMOL 1.4 fails to build with gcc 4.4 error

MacPorts noreply at macports.org
Mon May 2 08:21:38 PDT 2011


#29345: PyMOL 1.4 fails to build with gcc 4.4 error
------------------------------------------+---------------------------------
 Reporter:  michelle.lynn.gill@…          |       Owner:  macports-tickets@…                   
     Type:  defect                        |      Status:  new                                  
 Priority:  Normal                        |   Milestone:                                       
Component:  ports                         |     Version:  1.9.2                                
 Keywords:  pymol                         |        Port:  pymol+gcc44                          
------------------------------------------+---------------------------------
 When trying to build the latest PyMOL port using gcc 4.4, I get the
 following error:

 {{{
 :debug:build Environment: CFLAGS='-m64' CXXFLAGS='-m64'
 CPATH='/opt/local/include' MACOSX_DEPLOYMENT_TARGET='10.6'
 LIBRARY_PATH='/opt/local/lib' F90FLAGS='-m64'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/.CC_PRINT_OPTIONS'
 LDFLAGS='' FCFLAGS='-m64' OBJCFLAGS='-m64' FFLAGS='-m64'
 CC_PRINT_OPTIONS='YES'
 :debug:build Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/pymol"
 &&
 /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6
 setup.py --no-user-cfg build CC="/opt/local/bin/gcc-mp-4.4"
 CXX="/opt/local/bin/g++-mp-4.4"'
 :info:build invalid command name 'CC=/opt/local/bin/gcc-mp-4.4'
 :info:build shell command " cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/pymol"
 &&
 /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6
 setup.py --no-user-cfg build CC="/opt/local/bin/gcc-mp-4.4"
 CXX="/opt/local/bin/g++-mp-4.4" " returned error 1
 :error:build Target org.macports.build returned: shell command failed (see
 log for details)
 :debug:build Backtrace: shell command failed (see log for details)
 }}}

 There appears to be an error with the alias for CC (and possibly also CXX,
 since it appears after CC) as the file requested by the alias exists:

 {{{
 [mlgill at jayhawkbabe]~ 510 % otool -L /opt/local/bin/gcc-mp-4.4
 /opt/local/bin/gcc-mp-4.4:
         /opt/local/lib/libiconv.2.dylib (compatibility version 8.0.0,
 current version 8.0.0)
         /opt/local/lib/gcc44/libgcc_s.1.dylib (compatibility version
 1.0.0, current version 1.0.0)
         /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current
 version 125.2.10)

 }}}

 I have attached the log file and CC'd the maintainer. Please let me know
 if there is anything else you need.

-- 
Ticket URL: <https://trac.macports.org/ticket/29345>
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