[MacPorts] #37277: shogun: Undefined symbols: __gfortran_compare_string __gfortran_concat_string (was: problems installing SHOGUN with Moutain Lion)

[MacPorts]

#37277: shogun: Undefined symbols: __gfortran_compare_string
__gfortran_concat_string
-----------------------------+--------------------------------
  Reporter:  claire.zaidi@…  |      Owner:  macports-tickets@…
      Type:  defect          |     Status:  new
  Priority:  Normal          |  Milestone:
 Component:  ports           |    Version:  2.1.2
Resolution:                  |   Keywords:
      Port:  shogun          |
-----------------------------+--------------------------------
Changes (by ryandesign@…):

 * keywords:  moutain lion =>


Old description:

> Hi,
>
> I am trying to install SHOGUN with Moutain Lion 10.8.2, MacPorts 2.1.2,
> Xcode 4.5.2, python27.
> I followed the instructions:
> sudo port selfupdate
> sudo port install swig -php5 -ruby -perl +python
> sudo port install shogun
>
> I saw that I am not the only one to have this problem but don't find the
> solution.
>
> Here is the error (I attach the log file)
>

> --->  Computing dependencies for shogun
> --->  Fetching archive for shogun
> --->  Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from
> http://lil.fr.packages.macports.org/shogun
> --->  Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from
> http://mse.uk.packages.macports.org/sites/packages.macports.org/shogun
> --->  Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from
> http://packages.macports.org/shogun
> --->  Fetching distfiles for shogun
> --->  Verifying checksum(s) for shogun
> --->  Extracting shogun
> --->  Applying patches to shogun
> --->  Configuring shogun
> --->  Building shogun
>
> Error: org.macports.build for port shogun returned: command execution
> failed
> Please see the log file for port shogun for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/main.log
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port shogun failed
>

> Thanks

New description:

 Hi,

 I am trying to install SHOGUN with Moutain Lion 10.8.2, MacPorts 2.1.2,
 Xcode 4.5.2, python27.
 I followed the instructions:
 {{{
 sudo port selfupdate
 sudo port install swig -php5 -ruby -perl +python
 sudo port install shogun
 }}}

 I saw that I am not the only one to have this problem but don't find the
 solution.

 Here is the error (I attach the log file)

 {{{
 --->  Computing dependencies for shogun
 --->  Fetching archive for shogun
 --->  Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from
 http://lil.fr.packages.macports.org/shogun
 --->  Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from
 http://mse.uk.packages.macports.org/sites/packages.macports.org/shogun
 --->  Attempting to fetch shogun-0.9.3_0+gcc45.darwin_12.x86_64.tbz2 from
 http://packages.macports.org/shogun
 --->  Fetching distfiles for shogun
 --->  Verifying checksum(s) for shogun
 --->  Extracting shogun
 --->  Applying patches to shogun
 --->  Configuring shogun
 --->  Building shogun

 Error: org.macports.build for port shogun returned: command execution
 failed
 Please see the log file for port shogun for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port shogun failed
 }}}

 Thanks

--

Comment:

 The log says:
 {{{
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "__gfortran_compare_string", referenced from:
 :info:build       _ilaenv_ in liblapack.a(ilaenv.o)
 :info:build   "__gfortran_concat_string", referenced from:
 :info:build       _dgesvd_ in liblapack.a(dgesvd.o)
 :info:build       _dormbr_ in liblapack.a(dormbr.o)
 :info:build       _dormlq_ in liblapack.a(dormlq.o)
 :info:build       _dormqr_ in liblapack.a(dormqr.o)
 :info:build ld: symbol(s) not found for architecture x86_64
 }}}

 We should probably start by trying to [ticket:33205 update shogun to
 2.0.0] and then see where we are.

-- 
Ticket URL: <https://trac.macports.org/ticket/37277#comment:1>
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