[MacPorts] #35357: cdo: Could not link to szlib (was: CDO configure failure)
MacPorts
noreply at macports.org
Fri Jul 27 07:29:48 PDT 2012
#35357: cdo: Could not link to szlib
----------------------------+-----------------------------------------------
Reporter: bbaker@… | Owner: takeshi@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.1.2
Keywords: | Port: cdo
----------------------------+-----------------------------------------------
Changes (by ryandesign@…):
* owner: macports-tickets@… => takeshi@…
* port: => cdo
Old description:
> Hello,
> I am having problems trying to install CDO on a MacbookPro running Mac OS
> X 10.7.4. This is the error I received; Error: org.macports.configure for
> port cdo returned: configure failure: command execution failed
>
> I checked the log file below but cannot figure out how to fix the
> problem. Any help would be appreciated. Thanks, Barry
>
> version:1
> :debug:main epoch: in tree: 2 installed: 2
> :debug:main netcdf 4.2.0_4 exists in the ports tree
> :debug:main netcdf 4.2.0_4 +dap+netcdf4 is the latest installed
> :debug:main netcdf 4.2.0_4 +dap+netcdf4 is active
> :debug:main Merging existing variants '+dap+netcdf4' into variants
> :debug:main new fully merged portvariants: netcdf4 + dap +
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/netcdf
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Executing variant netcdf4 provides netcdf4
> :debug:main Executing variant dap provides dap
> :debug:main No need to upgrade! netcdf 4.2.0_4 >= netcdf 4.2.0_4
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main hdf5-18 1.8.9_0 exists in the ports tree
> :debug:main hdf5-18 1.8.9_0 is the latest installed
> :debug:main hdf5-18 1.8.9_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5-18
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main No need to upgrade! hdf5-18 1.8.9_0 >= hdf5-18 1.8.9_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main zlib 1.2.7_0 exists in the ports tree
> :debug:main zlib 1.2.7_0 is the latest installed
> :debug:main zlib 1.2.7_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main No need to upgrade! zlib 1.2.7_0 >= zlib 1.2.7_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main curl 7.26.0_0 exists in the ports tree
> :debug:main curl 7.26.0_0 +ssl is the latest installed
> :debug:main curl 7.26.0_0 +ssl is active
> :debug:main Merging existing variants '+ssl' into variants
> :debug:main new fully merged portvariants: ssl +
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Executing variant ssl provides ssl
> :debug:main No need to upgrade! curl 7.26.0_0 >= curl 7.26.0_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main libidn 1.25_0 exists in the ports tree
> :debug:main libidn 1.25_0 is the latest installed
> :debug:main libidn 1.25_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/mail/libidn
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main No need to upgrade! libidn 1.25_0 >= libidn 1.25_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main libiconv 1.14_0 exists in the ports tree
> :debug:main libiconv 1.14_0 is the latest installed
> :debug:main libiconv 1.14_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main gettext 0.18.1.1_2 exists in the ports tree
> :debug:main gettext 0.18.1.1_2 is the latest installed
> :debug:main gettext 0.18.1.1_2 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main No need to upgrade! gettext 0.18.1.1_2 >= gettext 0.18.1.1_2
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main ncurses 5.9_1 exists in the ports tree
> :debug:main ncurses 5.9_1 is the latest installed
> :debug:main ncurses 5.9_1 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main No need to upgrade! ncurses 5.9_1 >= ncurses 5.9_1
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main expat 2.1.0_0 exists in the ports tree
> :debug:main expat 2.1.0_0 is the latest installed
> :debug:main expat 2.1.0_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
> :debug:main epoch: in tree: 1 installed: 1
> :debug:main openssl 1.0.1c_0 exists in the ports tree
> :debug:main openssl 1.0.1c_0 is the latest installed
> :debug:main openssl 1.0.1c_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main Using group file
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main No need to upgrade! openssl 1.0.1c_0 >= openssl 1.0.1c_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main curl-ca-bundle 7.26.0_1 exists in the ports tree
> :debug:main curl-ca-bundle 7.26.0_1 is the latest installed
> :debug:main curl-ca-bundle 7.26.0_1 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net
> /curl-ca-bundle
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main universal_variant is false, so not adding the default
> universal variant
> :debug:main No need to upgrade! curl-ca-bundle 7.26.0_1 >= curl-ca-bundle
> 7.26.0_1
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main proj47 4.7.0_0 exists in the ports tree
> :debug:main proj47 4.7.0_0 is the latest installed
> :debug:main proj47 4.7.0_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/gis/proj47
> :debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
> :debug:main org.macports.load registered provides 'load', a pre-existing
> procedure. Target override will not be provided
> :debug:main org.macports.unload registered provides 'unload', a pre-
> existing procedure. Target override will not be provided
> :debug:main org.macports.distfiles registered provides 'distfiles', a
> pre-existing procedure. Target override will not be provided
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main No need to upgrade! proj47 4.7.0_0 >= proj47 4.7.0_0
> :msg:main ---> Computing dependencies for cdo:info:main .:debug:main cdo
> has no conflicts
> :debug:main Searching for dependency: netcdf
> :debug:main Found Dependency: receipt exists for netcdf
> :debug:main Searching for dependency: proj47
> :debug:main Found Dependency: receipt exists for proj47
> :msg:main
> :debug:main Executing org.macports.main (cdo)
> :debug:main changing euid/egid - current euid: 0 - current egid: 0
> :debug:main egid changed to: 501
> :debug:main euid changed to: 503
> :debug:archivefetch archivefetch phase started at Fri Jul 27 06:14:30 MDT
> 2012
> :msg:archivefetch ---> Fetching archive for cdo
> :debug:archivefetch Executing org.macports.archivefetch (cdo)
> :debug:archivefetch euid/egid changed to: 0/0
> :debug:archivefetch chowned /opt/local/var/macports/incoming to macports
> :debug:archivefetch euid/egid changed to: 503/501
> :info:archivefetch ---> cdo-1.5.5_0.darwin_11.x86_64.tbz2 doesn't seem
> to exist in /opt/local/var/macports/incoming/verified
> :msg:archivefetch ---> Attempting to fetch
> cdo-1.5.5_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/cdo
> :debug:archivefetch Fetching archive failed:: The requested URL returned
> error: 404
> :debug:archivefetch Privilege de-escalation not attempted as not running
> as root.
> :debug:fetch fetch phase started at Fri Jul 27 06:14:30 MDT 2012
> :notice:fetch ---> Fetching distfiles for cdo
> :debug:fetch Can't run fetch on this port without elevated privileges.
> Escalating privileges back to root.
> :debug:fetch euid changed to: 0. egid changed to: 0.
> :debug:fetch changing euid/egid - current euid: 0 - current egid: 0
> :debug:fetch egid changed to: 501
> :debug:fetch euid changed to: 503
> :debug:fetch Executing org.macports.fetch (cdo)
> :info:fetch ---> cdo-1.5.5.tar.gz doesn't seem to exist in
> /opt/local/var/macports/distfiles/cdo
> :notice:fetch ---> Attempting to fetch cdo-1.5.5.tar.gz from
> http://distfiles.macports.org/cdo
> :debug:fetch Privilege de-escalation not attempted as not running as
> root.
> :debug:checksum checksum phase started at Fri Jul 27 06:14:35 MDT 2012
> :notice:checksum ---> Verifying checksum(s) for cdo
> :debug:checksum Executing org.macports.checksum (cdo)
> :info:checksum ---> Checksumming cdo-1.5.5.tar.gz
> :debug:checksum Correct (md5) checksum for cdo-1.5.5.tar.gz
> :debug:checksum Correct (sha1) checksum for cdo-1.5.5.tar.gz
> :debug:checksum Correct (rmd160) checksum for cdo-1.5.5.tar.gz
> :debug:checksum Privilege de-escalation not attempted as not running as
> root.
> :debug:extract extract phase started at Fri Jul 27 06:14:35 MDT 2012
> :notice:extract ---> Extracting cdo
> :debug:extract Executing org.macports.extract (cdo)
> :info:extract ---> Extracting cdo-1.5.5.tar.gz
> :debug:extract setting option extract.args to
> '/opt/local/var/macports/distfiles/cdo/cdo-1.5.5.tar.gz'
> :debug:extract Environment: CPATH='/opt/local/include'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
> LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
> MACOSX_DEPLOYMENT_TARGET='10.7'
> :debug:extract Assembled command: 'cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work"
> && /usr/bin/gzip -dc
> '/opt/local/var/macports/distfiles/cdo/cdo-1.5.5.tar.gz' |
> /usr/bin/gnutar --no-same-owner -xf -'
> :debug:extract Executing command line: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work"
> && /usr/bin/gzip -dc
> '/opt/local/var/macports/distfiles/cdo/cdo-1.5.5.tar.gz' |
> /usr/bin/gnutar --no-same-owner -xf -
> :debug:extract euid/egid changed to: 0/0
> :debug:extract chowned
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work
> to macports
> :debug:extract euid/egid changed to: 503/501
> :debug:extract Privilege de-escalation not attempted as not running as
> root.
> :debug:patch patch phase started at Fri Jul 27 06:14:37 MDT 2012
> :debug:patch Executing org.macports.patch (cdo)
> :debug:patch Privilege de-escalation not attempted as not running as
> root.
> :debug:configure configure phase started at Fri Jul 27 06:14:37 MDT 2012
> :notice:configure ---> Configuring cdo
> :debug:configure Using compiler 'Mac OS X clang'
> :debug:configure Executing org.macports.configure (cdo)
> :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe
> -O2 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2
> -arch x86_64' LIBRARY_PATH='/opt/local/lib'
> MACOSX_DEPLOYMENT_TARGET='10.7' CXX='/usr/bin/clang++'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
> F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64'
> OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install
> -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64'
> CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang'
> :debug:configure Assembled command: 'cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.5.5"
> && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-
> dependency-tracking --with-proj=/opt/local/lib/proj47 --with-
> hdf5=/opt/local --with-zlib=/opt/local --with-szlib=/opt/local'
> :debug:configure Executing command line: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.5.5"
> && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-
> dependency-tracking --with-proj=/opt/local/lib/proj47 --with-
> hdf5=/opt/local --with-zlib=/opt/local --with-szlib=/opt/local
> :info:configure checking build system type... x86_64-apple-darwin11.4.0
> :info:configure checking host system type... x86_64-apple-darwin11.4.0
> :info:configure checking for a BSD-compatible install... /usr/bin/install
> -c
> :info:configure checking whether build environment is sane... yes
> :info:configure checking for a thread-safe mkdir -p... config/install-sh
> -c -d
> :info:configure checking for gawk... no
> :info:configure checking for mawk... no
> :info:configure checking for nawk... no
> :info:configure checking for awk... awk
> :info:configure checking whether make sets $(MAKE)... yes
> :info:configure checking whether to enable maintainer-specific portions
> of Makefiles... no
> :info:configure configure: setting up libtool
> :info:configure checking how to print strings... printf
> :info:configure checking for style of include used by make... GNU
> :info:configure checking for gcc... /usr/bin/clang
> :info:configure checking whether the C compiler works... yes
> :info:configure checking for C compiler default output file name... a.out
> :info:configure checking for suffix of executables...
> :info:configure checking whether we are cross compiling... no
> :info:configure checking for suffix of object files... o
> :info:configure checking whether we are using the GNU C compiler... yes
> :info:configure checking whether /usr/bin/clang accepts -g... yes
> :info:configure checking for /usr/bin/clang option to accept ISO C89...
> none needed
> :info:configure checking dependency style of /usr/bin/clang... none
> :info:configure checking for a sed that does not truncate output...
> /usr/bin/sed
> :info:configure checking for grep that handles long lines and -e...
> /usr/bin/grep
> :info:configure checking for egrep... /usr/bin/grep -E
> :info:configure checking for fgrep... /usr/bin/grep -F
> :info:configure checking for ld used by /usr/bin/clang... /usr/bin/ld
> :info:configure checking if the linker (/usr/bin/ld) is GNU ld... no
> :info:configure checking for BSD- or MS-compatible name lister (nm)...
> /opt/local/bin/nm
> :info:configure checking the name lister (/opt/local/bin/nm) interface...
> BSD nm
> :info:configure checking whether ln -s works... yes
> :info:configure checking the maximum length of command line arguments...
> 196608
> :info:configure checking whether the shell understands some XSI
> constructs... yes
> :info:configure checking whether the shell understands "+="... yes
> :info:configure checking for /usr/bin/ld option to reload object files...
> -r
> :info:configure checking for objdump... no
> :info:configure checking how to recognize dependent libraries... pass_all
> :info:configure checking for ar... ar
> :info:configure checking for strip... strip
> :info:configure checking for ranlib... ranlib
> :info:configure checking command to parse /opt/local/bin/nm output from
> /usr/bin/clang object... ok
> :info:configure checking for dsymutil... dsymutil
> :info:configure checking for nmedit... nmedit
> :info:configure checking for lipo... lipo
> :info:configure checking for otool... otool
> :info:configure checking for otool64... no
> :info:configure checking for -single_module linker flag... yes
> :info:configure checking for -exported_symbols_list linker flag... yes
> :info:configure checking for -force_load linker flag... yes
> :info:configure checking how to run the C preprocessor... /usr/bin/clang
> -E
> :info:configure checking for ANSI C header files... yes
> :info:configure checking for sys/types.h... yes
> :info:configure checking for sys/stat.h... yes
> :info:configure checking for stdlib.h... yes
> :info:configure checking for string.h... yes
> :info:configure checking for memory.h... yes
> :info:configure checking for strings.h... yes
> :info:configure checking for inttypes.h... yes
> :info:configure checking for stdint.h... yes
> :info:configure checking for unistd.h... yes
> :info:configure checking for dlfcn.h... yes
> :info:configure checking for objdir... .libs
> :info:configure checking if /usr/bin/clang supports -fno-rtti -fno-
> exceptions... yes
> :info:configure checking for /usr/bin/clang option to produce PIC...
> -fno-common -DPIC
> :info:configure checking if /usr/bin/clang PIC flag -fno-common -DPIC
> works... yes
> :info:configure checking if /usr/bin/clang static flag -static works...
> no
> :info:configure checking if /usr/bin/clang supports -c -o file.o... yes
> :info:configure checking if /usr/bin/clang supports -c -o file.o...
> (cached) yes
> :info:configure checking whether the /usr/bin/clang linker (/usr/bin/ld)
> supports shared libraries... yes
> :info:configure checking dynamic linker characteristics... darwin11.4.0
> dyld
> :info:configure checking how to hardcode library paths into programs...
> immediate
> :info:configure checking whether stripping libraries is possible... yes
> :info:configure checking if libtool supports shared libraries... yes
> :info:configure checking whether to build shared libraries... yes
> :info:configure checking whether to build static libraries... yes
> :info:configure checking for gcc... (cached) /usr/bin/clang
> :info:configure checking for /usr/bin/clang option to accept ISO C99...
> none needed
> :info:configure checking whether /usr/bin/clang and cc understand -c and
> -o together... yes
> :info:configure checking for ar... (cached) ar
> :info:configure checking for ld... /usr/bin/ld
> :info:configure checking for nm... /opt/local/bin/nm
> :info:configure checking for ar... (cached) ar
> :info:configure checking for as... as
> :info:configure checking for dlltool... no
> :info:configure checking for objdump... false
> :info:configure checking for strip... (cached) strip
> :info:configure checking for ranlib... (cached) ranlib
> :info:configure checking whether we are using the GNU C++ compiler... yes
> :info:configure checking whether /usr/bin/clang++ accepts -g... yes
> :info:configure checking dependency style of /usr/bin/clang++... none
> :info:configure checking how to run the C++ preprocessor...
> /usr/bin/clang++ -E
> :info:configure checking for ld used by /usr/bin/clang++... /usr/bin/ld
> :info:configure checking if the linker (/usr/bin/ld) is GNU ld... no
> :info:configure checking whether the /usr/bin/clang++ linker
> (/usr/bin/ld) supports shared libraries... yes
> :info:configure checking for /usr/bin/clang++ option to produce PIC...
> -fno-common -DPIC
> :info:configure checking if /usr/bin/clang++ PIC flag -fno-common -DPIC
> works... yes
> :info:configure checking if /usr/bin/clang++ static flag -static works...
> no
> :info:configure checking if /usr/bin/clang++ supports -c -o file.o... yes
> :info:configure checking if /usr/bin/clang++ supports -c -o file.o...
> (cached) yes
> :info:configure checking whether the /usr/bin/clang++ linker
> (/usr/bin/ld) supports shared libraries... yes
> :info:configure checking dynamic linker characteristics... darwin11.4.0
> dyld
> :info:configure checking how to hardcode library paths into programs...
> immediate
> :info:configure checking for special C compiler options needed for large
> files... no
> :info:configure checking for _FILE_OFFSET_BITS value needed for large
> files... no
> :info:configure checking for stdlib.h... (cached) yes
> :info:configure checking for unistd.h... (cached) yes
> :info:configure checking for sys/param.h... yes
> :info:configure checking for getpagesize... yes
> :info:configure checking for working mmap... yes
> :info:configure checking for malloc in -lmalloc... no
> :info:configure checking for struct stat.st_blksize... yes
> :info:configure checking sys/resource.h usability... yes
> :info:configure checking sys/resource.h presence... yes
> :info:configure checking for sys/resource.h... yes
> :info:configure checking sys/times.h usability... yes
> :info:configure checking sys/times.h presence... yes
> :info:configure checking for sys/times.h... yes
> :info:configure checking malloc.h usability... no
> :info:configure checking malloc.h presence... no
> :info:configure checking for malloc.h... no
> :info:configure checking for mallinfo... no
> :info:configure checking for isnan... yes
> :info:configure checking for getrlimit... yes
> :info:configure checking for gethostname... yes
> :info:configure checking for floor in -lm... yes
> :info:configure checking whether pthreads work with -pthread... yes
> :info:configure checking for joinable pthread attribute...
> PTHREAD_CREATE_JOINABLE
> :info:configure checking if more special flags are required for
> pthreads... -D_THREAD_SAFE
> :info:configure CC:/usr/bin/clang CFLAGS:-pipe -O2 -arch x86_64
> -D_THREAD_SAFE -pthread LIBS: -lm
> :info:configure checking zlib.h usability... yes
> :info:configure checking zlib.h presence... yes
> :info:configure checking for zlib.h... yes
> :info:configure checking for library containing deflate... -lz
> :info:configure checking szlib.h usability... no
> :info:configure checking szlib.h presence... no
> :info:configure checking for szlib.h... no
> :info:configure checking for library containing SZ_BufftoBuffCompress...
> no
> :info:configure configure: error: Could not link to szlib
> :info:configure Command failed: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.5.5"
> && ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-
> dependency-tracking --with-proj=/opt/local/lib/proj47 --with-
> hdf5=/opt/local --with-zlib=/opt/local --with-szlib=/opt/local
> :info:configure Exit code: 1
> :error:configure org.macports.configure for port cdo returned: configure
> failure: command execution failed
> :debug:configure Error code: NONE
> :debug:configure Backtrace: configure failure: command execution failed
> while executing
> "$procedure $targetname"
> :info:configure Warning: targets not executed for cdo:
> org.macports.activate org.macports.configure org.macports.build
> org.macports.destroot org.macports.install
> :notice:configure Please see the log file for port cdo for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/main.log
New description:
Hello,
I am having problems trying to install CDO on a MacbookPro running Mac OS
X 10.7.4. This is the error I received;
{{{
Error: org.macports.configure for port cdo returned: configure failure:
command execution failed
}}}
I checked the log file below but cannot figure out how to fix the problem.
Any help would be appreciated. Thanks, Barry
{{{
version:1
:debug:main epoch: in tree: 2 installed: 2
:debug:main netcdf 4.2.0_4 exists in the ports tree
:debug:main netcdf 4.2.0_4 +dap+netcdf4 is the latest installed
:debug:main netcdf 4.2.0_4 +dap+netcdf4 is active
:debug:main Merging existing variants '+dap+netcdf4' into variants
:debug:main new fully merged portvariants: netcdf4 + dap +
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/netcdf
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Executing variant netcdf4 provides netcdf4
:debug:main Executing variant dap provides dap
:debug:main No need to upgrade! netcdf 4.2.0_4 >= netcdf 4.2.0_4
:debug:main epoch: in tree: 0 installed: 0
:debug:main hdf5-18 1.8.9_0 exists in the ports tree
:debug:main hdf5-18 1.8.9_0 is the latest installed
:debug:main hdf5-18 1.8.9_0 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5-18
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default
one
:debug:main No need to upgrade! hdf5-18 1.8.9_0 >= hdf5-18 1.8.9_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main zlib 1.2.7_0 exists in the ports tree
:debug:main zlib 1.2.7_0 is the latest installed
:debug:main zlib 1.2.7_0 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! zlib 1.2.7_0 >= zlib 1.2.7_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main curl 7.26.0_0 exists in the ports tree
:debug:main curl 7.26.0_0 +ssl is the latest installed
:debug:main curl 7.26.0_0 +ssl is active
:debug:main Merging existing variants '+ssl' into variants
:debug:main new fully merged portvariants: ssl +
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl
:debug:main universal variant already exists, so not adding the default
one
:debug:main Executing variant ssl provides ssl
:debug:main No need to upgrade! curl 7.26.0_0 >= curl 7.26.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main libidn 1.25_0 exists in the ports tree
:debug:main libidn 1.25_0 is the latest installed
:debug:main libidn 1.25_0 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/mail/libidn
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! libidn 1.25_0 >= libidn 1.25_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main libiconv 1.14_0 exists in the ports tree
:debug:main libiconv 1.14_0 is the latest installed
:debug:main libiconv 1.14_0 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default
one
:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main gettext 0.18.1.1_2 exists in the ports tree
:debug:main gettext 0.18.1.1_2 is the latest installed
:debug:main gettext 0.18.1.1_2 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl
:debug:main universal variant already exists, so not adding the default
one
:debug:main No need to upgrade! gettext 0.18.1.1_2 >= gettext 0.18.1.1_2
:debug:main epoch: in tree: 0 installed: 0
:debug:main ncurses 5.9_1 exists in the ports tree
:debug:main ncurses 5.9_1 is the latest installed
:debug:main ncurses 5.9_1 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! ncurses 5.9_1 >= ncurses 5.9_1
:debug:main epoch: in tree: 0 installed: 0
:debug:main expat 2.1.0_0 exists in the ports tree
:debug:main expat 2.1.0_0 is the latest installed
:debug:main expat 2.1.0_0 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
:debug:main epoch: in tree: 1 installed: 1
:debug:main openssl 1.0.1c_0 exists in the ports tree
:debug:main openssl 1.0.1c_0 is the latest installed
:debug:main openssl 1.0.1c_0 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main Using group file
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default
one
:debug:main No need to upgrade! openssl 1.0.1c_0 >= openssl 1.0.1c_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main curl-ca-bundle 7.26.0_1 exists in the ports tree
:debug:main curl-ca-bundle 7.26.0_1 is the latest installed
:debug:main curl-ca-bundle 7.26.0_1 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net
/curl-ca-bundle
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main universal_variant is false, so not adding the default
universal variant
:debug:main No need to upgrade! curl-ca-bundle 7.26.0_1 >= curl-ca-bundle
7.26.0_1
:debug:main epoch: in tree: 0 installed: 0
:debug:main proj47 4.7.0_0 exists in the ports tree
:debug:main proj47 4.7.0_0 is the latest installed
:debug:main proj47 4.7.0_0 is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory:
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/gis/proj47
:debug:main OS darwin/11.4.0 (Mac OS X 10.7) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing
procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-
existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-
existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from
/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! proj47 4.7.0_0 >= proj47 4.7.0_0
:msg:main ---> Computing dependencies for cdo:info:main .:debug:main cdo
has no conflicts
:debug:main Searching for dependency: netcdf
:debug:main Found Dependency: receipt exists for netcdf
:debug:main Searching for dependency: proj47
:debug:main Found Dependency: receipt exists for proj47
:msg:main
:debug:main Executing org.macports.main (cdo)
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 503
:debug:archivefetch archivefetch phase started at Fri Jul 27 06:14:30 MDT
2012
:msg:archivefetch ---> Fetching archive for cdo
:debug:archivefetch Executing org.macports.archivefetch (cdo)
:debug:archivefetch euid/egid changed to: 0/0
:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
:debug:archivefetch euid/egid changed to: 503/501
:info:archivefetch ---> cdo-1.5.5_0.darwin_11.x86_64.tbz2 doesn't seem to
exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch ---> Attempting to fetch
cdo-1.5.5_0.darwin_11.x86_64.tbz2 from http://packages.macports.org/cdo
:debug:archivefetch Fetching archive failed:: The requested URL returned
error: 404
:debug:archivefetch Privilege de-escalation not attempted as not running
as root.
:debug:fetch fetch phase started at Fri Jul 27 06:14:30 MDT 2012
:notice:fetch ---> Fetching distfiles for cdo
:debug:fetch Can't run fetch on this port without elevated privileges.
Escalating privileges back to root.
:debug:fetch euid changed to: 0. egid changed to: 0.
:debug:fetch changing euid/egid - current euid: 0 - current egid: 0
:debug:fetch egid changed to: 501
:debug:fetch euid changed to: 503
:debug:fetch Executing org.macports.fetch (cdo)
:info:fetch ---> cdo-1.5.5.tar.gz doesn't seem to exist in
/opt/local/var/macports/distfiles/cdo
:notice:fetch ---> Attempting to fetch cdo-1.5.5.tar.gz from
http://distfiles.macports.org/cdo
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Fri Jul 27 06:14:35 MDT 2012
:notice:checksum ---> Verifying checksum(s) for cdo
:debug:checksum Executing org.macports.checksum (cdo)
:info:checksum ---> Checksumming cdo-1.5.5.tar.gz
:debug:checksum Correct (md5) checksum for cdo-1.5.5.tar.gz
:debug:checksum Correct (sha1) checksum for cdo-1.5.5.tar.gz
:debug:checksum Correct (rmd160) checksum for cdo-1.5.5.tar.gz
:debug:checksum Privilege de-escalation not attempted as not running as
root.
:debug:extract extract phase started at Fri Jul 27 06:14:35 MDT 2012
:notice:extract ---> Extracting cdo
:debug:extract Executing org.macports.extract (cdo)
:info:extract ---> Extracting cdo-1.5.5.tar.gz
:debug:extract setting option extract.args to
'/opt/local/var/macports/distfiles/cdo/cdo-1.5.5.tar.gz'
:debug:extract Environment: CPATH='/opt/local/include'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
MACOSX_DEPLOYMENT_TARGET='10.7'
:debug:extract Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work"
&& /usr/bin/gzip -dc
'/opt/local/var/macports/distfiles/cdo/cdo-1.5.5.tar.gz' | /usr/bin/gnutar
--no-same-owner -xf -'
:debug:extract Executing command line: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work"
&& /usr/bin/gzip -dc
'/opt/local/var/macports/distfiles/cdo/cdo-1.5.5.tar.gz' | /usr/bin/gnutar
--no-same-owner -xf -
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work
to macports
:debug:extract euid/egid changed to: 503/501
:debug:extract Privilege de-escalation not attempted as not running as
root.
:debug:patch patch phase started at Fri Jul 27 06:14:37 MDT 2012
:debug:patch Executing org.macports.patch (cdo)
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Fri Jul 27 06:14:37 MDT 2012
:notice:configure ---> Configuring cdo
:debug:configure Using compiler 'Mac OS X clang'
:debug:configure Executing org.macports.configure (cdo)
:debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2
-arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch
x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.7'
CXX='/usr/bin/clang++'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/.CC_PRINT_OPTIONS'
F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64'
OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install
-c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64'
CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang'
:debug:configure Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.5.5"
&& ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-
dependency-tracking --with-proj=/opt/local/lib/proj47 --with-
hdf5=/opt/local --with-zlib=/opt/local --with-szlib=/opt/local'
:debug:configure Executing command line: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.5.5"
&& ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-
dependency-tracking --with-proj=/opt/local/lib/proj47 --with-
hdf5=/opt/local --with-zlib=/opt/local --with-szlib=/opt/local
:info:configure checking build system type... x86_64-apple-darwin11.4.0
:info:configure checking host system type... x86_64-apple-darwin11.4.0
:info:configure checking for a BSD-compatible install... /usr/bin/install
-c
:info:configure checking whether build environment is sane... yes
:info:configure checking for a thread-safe mkdir -p... config/install-sh
-c -d
:info:configure checking for gawk... no
:info:configure checking for mawk... no
:info:configure checking for nawk... no
:info:configure checking for awk... awk
:info:configure checking whether make sets $(MAKE)... yes
:info:configure checking whether to enable maintainer-specific portions of
Makefiles... no
:info:configure configure: setting up libtool
:info:configure checking how to print strings... printf
:info:configure checking for style of include used by make... GNU
:info:configure checking for gcc... /usr/bin/clang
:info:configure checking whether the C compiler works... yes
:info:configure checking for C compiler default output file name... a.out
:info:configure checking for suffix of executables...
:info:configure checking whether we are cross compiling... no
:info:configure checking for suffix of object files... o
:info:configure checking whether we are using the GNU C compiler... yes
:info:configure checking whether /usr/bin/clang accepts -g... yes
:info:configure checking for /usr/bin/clang option to accept ISO C89...
none needed
:info:configure checking dependency style of /usr/bin/clang... none
:info:configure checking for a sed that does not truncate output...
/usr/bin/sed
:info:configure checking for grep that handles long lines and -e...
/usr/bin/grep
:info:configure checking for egrep... /usr/bin/grep -E
:info:configure checking for fgrep... /usr/bin/grep -F
:info:configure checking for ld used by /usr/bin/clang... /usr/bin/ld
:info:configure checking if the linker (/usr/bin/ld) is GNU ld... no
:info:configure checking for BSD- or MS-compatible name lister (nm)...
/opt/local/bin/nm
:info:configure checking the name lister (/opt/local/bin/nm) interface...
BSD nm
:info:configure checking whether ln -s works... yes
:info:configure checking the maximum length of command line arguments...
196608
:info:configure checking whether the shell understands some XSI
constructs... yes
:info:configure checking whether the shell understands "+="... yes
:info:configure checking for /usr/bin/ld option to reload object files...
-r
:info:configure checking for objdump... no
:info:configure checking how to recognize dependent libraries... pass_all
:info:configure checking for ar... ar
:info:configure checking for strip... strip
:info:configure checking for ranlib... ranlib
:info:configure checking command to parse /opt/local/bin/nm output from
/usr/bin/clang object... ok
:info:configure checking for dsymutil... dsymutil
:info:configure checking for nmedit... nmedit
:info:configure checking for lipo... lipo
:info:configure checking for otool... otool
:info:configure checking for otool64... no
:info:configure checking for -single_module linker flag... yes
:info:configure checking for -exported_symbols_list linker flag... yes
:info:configure checking for -force_load linker flag... yes
:info:configure checking how to run the C preprocessor... /usr/bin/clang
-E
:info:configure checking for ANSI C header files... yes
:info:configure checking for sys/types.h... yes
:info:configure checking for sys/stat.h... yes
:info:configure checking for stdlib.h... yes
:info:configure checking for string.h... yes
:info:configure checking for memory.h... yes
:info:configure checking for strings.h... yes
:info:configure checking for inttypes.h... yes
:info:configure checking for stdint.h... yes
:info:configure checking for unistd.h... yes
:info:configure checking for dlfcn.h... yes
:info:configure checking for objdir... .libs
:info:configure checking if /usr/bin/clang supports -fno-rtti -fno-
exceptions... yes
:info:configure checking for /usr/bin/clang option to produce PIC... -fno-
common -DPIC
:info:configure checking if /usr/bin/clang PIC flag -fno-common -DPIC
works... yes
:info:configure checking if /usr/bin/clang static flag -static works... no
:info:configure checking if /usr/bin/clang supports -c -o file.o... yes
:info:configure checking if /usr/bin/clang supports -c -o file.o...
(cached) yes
:info:configure checking whether the /usr/bin/clang linker (/usr/bin/ld)
supports shared libraries... yes
:info:configure checking dynamic linker characteristics... darwin11.4.0
dyld
:info:configure checking how to hardcode library paths into programs...
immediate
:info:configure checking whether stripping libraries is possible... yes
:info:configure checking if libtool supports shared libraries... yes
:info:configure checking whether to build shared libraries... yes
:info:configure checking whether to build static libraries... yes
:info:configure checking for gcc... (cached) /usr/bin/clang
:info:configure checking for /usr/bin/clang option to accept ISO C99...
none needed
:info:configure checking whether /usr/bin/clang and cc understand -c and
-o together... yes
:info:configure checking for ar... (cached) ar
:info:configure checking for ld... /usr/bin/ld
:info:configure checking for nm... /opt/local/bin/nm
:info:configure checking for ar... (cached) ar
:info:configure checking for as... as
:info:configure checking for dlltool... no
:info:configure checking for objdump... false
:info:configure checking for strip... (cached) strip
:info:configure checking for ranlib... (cached) ranlib
:info:configure checking whether we are using the GNU C++ compiler... yes
:info:configure checking whether /usr/bin/clang++ accepts -g... yes
:info:configure checking dependency style of /usr/bin/clang++... none
:info:configure checking how to run the C++ preprocessor...
/usr/bin/clang++ -E
:info:configure checking for ld used by /usr/bin/clang++... /usr/bin/ld
:info:configure checking if the linker (/usr/bin/ld) is GNU ld... no
:info:configure checking whether the /usr/bin/clang++ linker (/usr/bin/ld)
supports shared libraries... yes
:info:configure checking for /usr/bin/clang++ option to produce PIC...
-fno-common -DPIC
:info:configure checking if /usr/bin/clang++ PIC flag -fno-common -DPIC
works... yes
:info:configure checking if /usr/bin/clang++ static flag -static works...
no
:info:configure checking if /usr/bin/clang++ supports -c -o file.o... yes
:info:configure checking if /usr/bin/clang++ supports -c -o file.o...
(cached) yes
:info:configure checking whether the /usr/bin/clang++ linker (/usr/bin/ld)
supports shared libraries... yes
:info:configure checking dynamic linker characteristics... darwin11.4.0
dyld
:info:configure checking how to hardcode library paths into programs...
immediate
:info:configure checking for special C compiler options needed for large
files... no
:info:configure checking for _FILE_OFFSET_BITS value needed for large
files... no
:info:configure checking for stdlib.h... (cached) yes
:info:configure checking for unistd.h... (cached) yes
:info:configure checking for sys/param.h... yes
:info:configure checking for getpagesize... yes
:info:configure checking for working mmap... yes
:info:configure checking for malloc in -lmalloc... no
:info:configure checking for struct stat.st_blksize... yes
:info:configure checking sys/resource.h usability... yes
:info:configure checking sys/resource.h presence... yes
:info:configure checking for sys/resource.h... yes
:info:configure checking sys/times.h usability... yes
:info:configure checking sys/times.h presence... yes
:info:configure checking for sys/times.h... yes
:info:configure checking malloc.h usability... no
:info:configure checking malloc.h presence... no
:info:configure checking for malloc.h... no
:info:configure checking for mallinfo... no
:info:configure checking for isnan... yes
:info:configure checking for getrlimit... yes
:info:configure checking for gethostname... yes
:info:configure checking for floor in -lm... yes
:info:configure checking whether pthreads work with -pthread... yes
:info:configure checking for joinable pthread attribute...
PTHREAD_CREATE_JOINABLE
:info:configure checking if more special flags are required for
pthreads... -D_THREAD_SAFE
:info:configure CC:/usr/bin/clang CFLAGS:-pipe -O2 -arch x86_64
-D_THREAD_SAFE -pthread LIBS: -lm
:info:configure checking zlib.h usability... yes
:info:configure checking zlib.h presence... yes
:info:configure checking for zlib.h... yes
:info:configure checking for library containing deflate... -lz
:info:configure checking szlib.h usability... no
:info:configure checking szlib.h presence... no
:info:configure checking for szlib.h... no
:info:configure checking for library containing SZ_BufftoBuffCompress...
no
:info:configure configure: error: Could not link to szlib
:info:configure Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/work/cdo-1.5.5"
&& ./configure --prefix=/opt/local --with-netcdf=/opt/local --disable-
dependency-tracking --with-proj=/opt/local/lib/proj47 --with-
hdf5=/opt/local --with-zlib=/opt/local --with-szlib=/opt/local
:info:configure Exit code: 1
:error:configure org.macports.configure for port cdo returned: configure
failure: command execution failed
:debug:configure Error code: NONE
:debug:configure Backtrace: configure failure: command execution failed
while executing
"$procedure $targetname"
:info:configure Warning: targets not executed for cdo:
org.macports.activate org.macports.configure org.macports.build
org.macports.destroot org.macports.install
:notice:configure Please see the log file for port cdo for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cdo/cdo/main.log
}}}
--
Comment:
Please remember to use WikiFormatting, and that attaching voluminous
output is preferred over pasting it.
--
Ticket URL: <https://trac.macports.org/ticket/35357#comment:1>
MacPorts <http://www.macports.org/>
Ports system for Mac OS
More information about the macports-tickets
mailing list