[MacPorts] #36445: atlas @3.10.0+universal fails to install after apparently compiling

MacPorts noreply at macports.org
Wed Oct 3 09:12:56 PDT 2012 

#36445: atlas @3.10.0+universal fails to install after apparently compiling
----------------------+---------------------
  Reporter:  lists@…  |      Owner:  vince@…
      Type:  defect   |     Status:  new
  Priority:  Normal   |  Milestone:
 Component:  ports    |    Version:  2.1.2
Resolution:           |   Keywords:
      Port:  atlas    |
----------------------+---------------------
Changes (by macsforever2000@…):

 * owner:  macports-tickets@… => vince@…
 * port:   => atlas


Old description:

> Installing atlas for x86_64 worked. However, I want a universal version.
> So I did:
> % sudo port install atlas +universal
> Password:
> --->  Computing dependencies for atlas
> --->  Fetching archive for atlas
> --->  Attempting to fetch
> atlas-3.10.0_0+gcc45+universal.darwin_12.i386-x86_64.tbz2 from
> http://lil.fr.packages.macports.org/atlas
> --->  Attempting to fetch
> atlas-3.10.0_0+gcc45+universal.darwin_12.i386-x86_64.tbz2 from
> http://mse.uk.packages.macports.org/sites/packages.macports.org/atlas
> --->  Attempting to fetch
> atlas-3.10.0_0+gcc45+universal.darwin_12.i386-x86_64.tbz2 from
> http://packages.macports.org/atlas
> --->  Fetching distfiles for atlas
> Warning: GCC compilers on OS X do not support AVX instructions.
> --->  Verifying checksum(s) for atlas
> --->  Extracting atlas
> --->  Applying patches to atlas
> --->  Configuring atlas
> --->  Building atlas
> Error: reinplace: couldn't read file
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile":
> no such file or directory
> Error: org.macports.build for port atlas returned: reinplace sed(1)
> failed
> Please see the log file for port atlas for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port atlas failed
>
> The log file says:
>
> :info:build ATLAS install complete.  Examine
> :info:build ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
> :info:build make[1]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
> :info:build /usr/bin/make clean
> :info:build make[1]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
> :info:build rm -rf *.dSYM
> :info:build rm -rf *.o x* config?.out *core*
> :info:build make[1]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
> :info:build make: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
> :debug:build Executing proc-post-org.macports.build-build-0
> :debug:build Executing reinplace: /usr/bin/sed
> {s|^LIBTOOL=.*$|LIBTOOL=$(GCC) $(GCCFLAGS)|} <
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile
> >@ file10
> :debug:build couldn't read file
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile":
> no such file or directory
>     while executing
> "exec /usr/bin/sed {s|^LIBTOOL=.*$|LIBTOOL=$(GCC) $(GCCFLAGS)|} <
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_rele..."
>     ("eval" body line 1)
>     invoked from within
> "eval exec $cmdline"
> :error:build reinplace: couldn't read file
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile":
> no such file or directory
> :error:build org.macports.build for port atlas returned: reinplace sed(1)
> failed
> :debug:build Error code: NONE
> :debug:build Backtrace: reinplace sed(1) failed
>
> (full log file attached)
>

> So it seems that the actual compilation went fine...

New description:

 Installing atlas for x86_64 worked. However, I want a universal version.
 So I did:
 {{{
 % sudo port install atlas +universal
 Password:
 --->  Computing dependencies for atlas
 --->  Fetching archive for atlas
 --->  Attempting to fetch
 atlas-3.10.0_0+gcc45+universal.darwin_12.i386-x86_64.tbz2 from
 http://lil.fr.packages.macports.org/atlas
 --->  Attempting to fetch
 atlas-3.10.0_0+gcc45+universal.darwin_12.i386-x86_64.tbz2 from
 http://mse.uk.packages.macports.org/sites/packages.macports.org/atlas
 --->  Attempting to fetch
 atlas-3.10.0_0+gcc45+universal.darwin_12.i386-x86_64.tbz2 from
 http://packages.macports.org/atlas
 --->  Fetching distfiles for atlas
 Warning: GCC compilers on OS X do not support AVX instructions.
 --->  Verifying checksum(s) for atlas
 --->  Extracting atlas
 --->  Applying patches to atlas
 --->  Configuring atlas
 --->  Building atlas
 Error: reinplace: couldn't read file
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile":
 no such file or directory
 Error: org.macports.build for port atlas returned: reinplace sed(1) failed
 Please see the log file for port atlas for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port atlas failed
 }}}

 The log file says:

 {{{
 :info:build ATLAS install complete.  Examine
 :info:build ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
 :info:build /usr/bin/make clean
 :info:build make[1]: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
 :info:build rm -rf *.dSYM
 :info:build rm -rf *.o x* config?.out *core*
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
 :info:build make: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0-i386/build'
 :debug:build Executing proc-post-org.macports.build-build-0
 :debug:build Executing reinplace: /usr/bin/sed
 {s|^LIBTOOL=.*$|LIBTOOL=$(GCC) $(GCCFLAGS)|} <
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile
 >@ file10
 :debug:build couldn't read file
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile":
 no such file or directory
     while executing
 "exec /usr/bin/sed {s|^LIBTOOL=.*$|LIBTOOL=$(GCC) $(GCCFLAGS)|} <
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_rele..."
     ("eval" body line 1)
     invoked from within
 "eval exec $cmdline"
 :error:build reinplace: couldn't read file
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.10.0/build/lib/Makefile":
 no such file or directory
 :error:build org.macports.build for port atlas returned: reinplace sed(1)
 failed
 :debug:build Error code: NONE
 :debug:build Backtrace: reinplace sed(1) failed
 }}}

 (full log file attached)


 So it seems that the actual compilation went fine...

--

Comment:

 In the future, please use WikiFormatting, fill in the Port field and Cc
 the port maintainer(s).

-- 
Ticket URL: <https://trac.macports.org/ticket/36445#comment:5>
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