[MacPorts] #35845: R-framework package 'agl' has undeclared dependencies

[MacPorts]

#35845: R-framework package 'agl' has undeclared dependencies
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  Reporter:  me@…                |      Owner:  kjell.konis@…
      Type:  defect              |     Status:  new
  Priority:  Normal              |  Milestone:
 Component:  ports               |    Version:  2.1.2
Resolution:                      |   Keywords:
      Port:  R-framework, R-app  |
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Comment (by me@…):

 Freetype was already installed.

 Recently updated macports & outdated ports; texlive-bin @2012_3+x11 gave a
 notice that “`XeTeX is built without support for Apple Type Services for
 Unicode Imaging (ATSUI) or Apple Advanced Typography (AAT). To enable it,
 build texlive-bin with the +atsui variant. Note that this will force
 texlive and all of its dependencies to be built 32-bit.`” (I'd rather keep
 everything 64-bit), and I followed the recommendation from TeXShop @2.47_0
 that Lion users replace it with TeXShop3 @3.11_0.

 After the updates, installing rgl still appears to succeed in the
 terminal, and fails with the same error in R-app.  I tried downloading
 RStudio, and it appears to succeed within RStudio.  Is R-app starting
 R-framework in a different environment?  Could it just be a wrong setting?

 I don't mind having to install dependencies manually, but I would prefer
 an error message like “R package 'rgl' requires external library 'mesa',
 which must be installed outside of R.  If you're not sure how to do this,
 see `http://r-project.org/doc/deps#macports`.”  I was installing rgl
 because Rcmdr depends on it, and I am able to run Rcmdr from terminal or
 Rstudio, so I don't expect the problem with R-app to prevent me from
 getting things done.

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Ticket URL: <https://trac.macports.org/ticket/35845#comment:3>
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