[MacPorts] #36213: bzip2: fatal error: 'stdlib.h' file not found (was: error)

MacPorts noreply at macports.org
Tue Sep 18 14:04:25 PDT 2012 

#36213: bzip2: fatal error: 'stdlib.h' file not found
----------------------------+--------------------------------
  Reporter:  exoneration@…  |      Owner:  macports-tickets@…
      Type:  defect         |     Status:  closed
  Priority:  Normal         |  Milestone:
 Component:  ports          |    Version:  2.1.2
Resolution:  invalid        |   Keywords:
      Port:  bzip2          |
----------------------------+--------------------------------
Changes (by ryandesign@…):

 * status:  new => closed
 * cc: ryandesign@… (added)
 * resolution:   => invalid
 * port:   => bzip2


Old description:

> OS: Mountain Lion
>
> h100-195:~ maxx$ sudo port install bzip2
> --->  Building bzip2
> Error: org.macports.build for port bzip2 returned: command execution
> failed
> Please see the log file for port bzip2 for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/main.log
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port bzip2 failed
> h100-195:~ maxx$
>
> --------------------------------
> main.log
> version:1
> :debug:main bzip2 has no conflicts
> :debug:main Executing org.macports.main (bzip2)
> :debug:main changing euid/egid - current euid: 0 - current egid: 0
> :debug:main egid changed to: 501
> :debug:main euid changed to: 502
> :debug:main Skipping completed org.macports.archivefetch (bzip2)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.fetch (bzip2)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.checksum (bzip2)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.extract (bzip2)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.patch (bzip2)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.configure (bzip2)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:build build phase started at Tue Sep 18 13:32:53 MDT 2012
> :notice:build --->  Building bzip2
> :debug:build Executing org.macports.build (bzip2)
> :debug:build Environment: CPATH='/opt/local/include'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/.CC_PRINT_OPTIONS'
> LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
> MACOSX_DEPLOYMENT_TARGET='10.8'
> :debug:build Assembled command: 'cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6"
> && /usr/bin/make -j8 -w all
> CC="/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64" PREFIX=/opt/local'
> :debug:build Executing command line:  cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6"
> && /usr/bin/make -j8 -w all
> CC="/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64" PREFIX=/opt/local
> :info:build make: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6'
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c huffman.c
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c crctable.c
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c randtable.c
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c compress.c
> :info:build
> :info:build If compilation produces errors, or a large number of
> warnings,
> :info:build please read README.COMPILATION.PROBLEMS -- you might be able
> to
> :info:build adjust the flags in this Makefile to improve matters.
> :info:build
> :info:build Also in README.COMPILATION.PROBLEMS are some hints that may
> help
> :info:build if your build produces an executable which is unable to
> correctly
> :info:build handle so-called 'large files' -- files of size 2GB or more.
> :info:build
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c blocksort.c
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c decompress.c
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c bzlib.c
> :info:build
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c bzip2.c
> :info:build In file included from huffman.c:22:
> :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
> found
> :info:build #include <stdlib.h>
> :info:build          ^
> :info:build In file included from crctable.c:22:
> :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
> found
> :info:build #include <stdlib.h>
> :info:build          ^
> :info:build bzip2.c:50:10: fatal error: 'stdio.h' file not found
> :info:build #include <stdio.h>
> :info:build          ^
> :info:build In file included from compress.c:29:
> :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
> found
> :info:build #include <stdlib.h>
> :info:build          ^
> :info:build In file included from bzlib.c:31:
> :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
> found
> :info:build #include <stdlib.h>
> :info:build          ^
> :info:build In file included from blocksort.c:22:
> :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
> found
> :info:build #include <stdlib.h>
> :info:build          ^
> :info:build 1 error generated.
> :info:build In file included from decompress.c:22:
> :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
> found
> :info:build #include <stdlib.h>
> :info:build          ^
> :info:build In file included from randtable.c:22:
> :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
> found
> :info:build #include <stdlib.h>
> :info:build          ^
> :info:build 1 error generated.
> :info:build make: *** [crctable.o] Error 1
> :info:build make: *** Waiting for unfinished jobs....
> :info:build make: *** [huffman.o] Error 1
> :info:build 1 error generated.
> :info:build make: *** [randtable.o] Error 1
> :info:build 1 error generated.
> :info:build 1 error generated.
> :info:build 1 error generated.
> :info:build make: *** [blocksort.o] Error 1
> :info:build make: *** [compress.o] Error 1
> :info:build make: *** [bzip2.o] Error 1
> :info:build 1 error generated.
> :info:build make: *** [bzlib.o] Error 1
> :info:build 1 error generated.
> :info:build make: *** [decompress.o] Error 1
> :info:build make: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6'
> :info:build Command failed:  cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6"
> && /usr/bin/make -j8 -w all
> CC="/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
> -arch x86_64" PREFIX=/opt/local
> :info:build Exit code: 2
> :error:build org.macports.build for port bzip2 returned: command
> execution failed
> :debug:build Error code: CHILDSTATUS 655 2
> :debug:build Backtrace: command execution failed
>     while executing
> "system -nice 0 $fullcmdstring"
>     ("eval" body line 1)
>     invoked from within
> "eval system $notty $nice \$fullcmdstring"
>     invoked from within
> "command_exec build"
>     (procedure "portbuild::build_main" line 8)
>     invoked from within
> "$procedure $targetname"
> :info:build Warning: targets not executed for bzip2:
> org.macports.activate org.macports.build org.macports.destroot
> org.macports.install
> :notice:build Please see the log file for port bzip2 for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/main.log

New description:

 OS: Mountain Lion

 {{{
 h100-195:~ maxx$ sudo port install bzip2
 --->  Building bzip2
 Error: org.macports.build for port bzip2 returned: command execution
 failed
 Please see the log file for port bzip2 for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port bzip2 failed
 h100-195:~ maxx$
 }}}

 --------------------------------
 main.log
 {{{
 version:1
 :debug:main bzip2 has no conflicts
 :debug:main Executing org.macports.main (bzip2)
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 502
 :debug:main Skipping completed org.macports.archivefetch (bzip2)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (bzip2)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (bzip2)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (bzip2)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (bzip2)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.configure (bzip2)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:build build phase started at Tue Sep 18 13:32:53 MDT 2012
 :notice:build --->  Building bzip2
 :debug:build Executing org.macports.build (bzip2)
 :debug:build Environment: CPATH='/opt/local/include'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/.CC_PRINT_OPTIONS'
 LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
 MACOSX_DEPLOYMENT_TARGET='10.8'
 :debug:build Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6"
 && /usr/bin/make -j8 -w all
 CC="/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64" PREFIX=/opt/local'
 :debug:build Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6"
 && /usr/bin/make -j8 -w all
 CC="/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64" PREFIX=/opt/local
 :info:build make: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6'
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c huffman.c
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c crctable.c
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c randtable.c
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c compress.c
 :info:build
 :info:build If compilation produces errors, or a large number of warnings,
 :info:build please read README.COMPILATION.PROBLEMS -- you might be able
 to
 :info:build adjust the flags in this Makefile to improve matters.
 :info:build
 :info:build Also in README.COMPILATION.PROBLEMS are some hints that may
 help
 :info:build if your build produces an executable which is unable to
 correctly
 :info:build handle so-called 'large files' -- files of size 2GB or more.
 :info:build
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c blocksort.c
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c decompress.c
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c bzlib.c
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64 -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c bzip2.c
 :info:build In file included from huffman.c:22:
 :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
 found
 :info:build #include <stdlib.h>
 :info:build          ^
 :info:build In file included from crctable.c:22:
 :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
 found
 :info:build #include <stdlib.h>
 :info:build          ^
 :info:build bzip2.c:50:10: fatal error: 'stdio.h' file not found
 :info:build #include <stdio.h>
 :info:build          ^
 :info:build In file included from compress.c:29:
 :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
 found
 :info:build #include <stdlib.h>
 :info:build          ^
 :info:build In file included from bzlib.c:31:
 :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
 found
 :info:build #include <stdlib.h>
 :info:build          ^
 :info:build In file included from blocksort.c:22:
 :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
 found
 :info:build #include <stdlib.h>
 :info:build          ^
 :info:build 1 error generated.
 :info:build In file included from decompress.c:22:
 :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
 found
 :info:build #include <stdlib.h>
 :info:build          ^
 :info:build In file included from randtable.c:22:
 :info:build ./bzlib_private.h:25:10: fatal error: 'stdlib.h' file not
 found
 :info:build #include <stdlib.h>
 :info:build          ^
 :info:build 1 error generated.
 :info:build make: *** [crctable.o] Error 1
 :info:build make: *** Waiting for unfinished jobs....
 :info:build make: *** [huffman.o] Error 1
 :info:build 1 error generated.
 :info:build make: *** [randtable.o] Error 1
 :info:build 1 error generated.
 :info:build 1 error generated.
 :info:build 1 error generated.
 :info:build make: *** [blocksort.o] Error 1
 :info:build make: *** [compress.o] Error 1
 :info:build make: *** [bzip2.o] Error 1
 :info:build 1 error generated.
 :info:build make: *** [bzlib.o] Error 1
 :info:build 1 error generated.
 :info:build make: *** [decompress.o] Error 1
 :info:build make: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6'
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/work/bzip2-1.0.6"
 && /usr/bin/make -j8 -w all
 CC="/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
 -arch x86_64" PREFIX=/opt/local
 :info:build Exit code: 2
 :error:build org.macports.build for port bzip2 returned: command execution
 failed
 :debug:build Error code: CHILDSTATUS 655 2
 :debug:build Backtrace: command execution failed
     while executing
 "system -nice 0 $fullcmdstring"
     ("eval" body line 1)
     invoked from within
 "eval system $notty $nice \$fullcmdstring"
     invoked from within
 "command_exec build"
     (procedure "portbuild::build_main" line 8)
     invoked from within
 "$procedure $targetname"
 :info:build Warning: targets not executed for bzip2: org.macports.activate
 org.macports.build org.macports.destroot org.macports.install
 :notice:build Please see the log file for port bzip2 for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_archivers_bzip2/bzip2/main.log
 }}}

--

Comment:

 It sounds like you haven't installed the command line tools properly.
 Please do so; see wiki:ProblemHotlist#clt . Then "sudo port clean bzip2"
 and any other ports you might have tried to install, then try again.

-- 
Ticket URL: <https://trac.macports.org/ticket/36213#comment:1>
MacPorts <http://www.macports.org/>
Ports system for Mac OS

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