[MacPorts] #41898: error installing metis (was: error installing Octave)

MacPorts noreply at macports.org
Mon Dec 23 10:41:27 PST 2013 

#41898: error installing metis
------------------------+--------------------------------
  Reporter:  mfadams@…  |      Owner:  macports-tickets@…
      Type:  defect     |     Status:  new
  Priority:  Normal     |  Milestone:
 Component:  ports      |    Version:  2.2.1
Resolution:             |   Keywords:
      Port:  metis      |
------------------------+--------------------------------
Changes (by macsforever2000@…):

 * keywords:  Octave =>
 * port:   => metis


Old description:

> I get this error when I try to install Octave.  I have OSX 10.8.5 and
> XCode 5.0.2.  Any ideas?
> Thanks,
> Mark
>
> 12:56  ~$  sudo port install octave +atlas+docs
> Warning: No port clang found in the index.
> --->  Computing dependencies for octave
> --->  Dependencies to be installed: SuiteSparse metis arpack atlas
> clang-3.3 clang_select ld64 llvm-3.3 llvm_select gcc48 cctools cctools-
> headers cloog isl gcc_select libgcc epstool fftw-3-single gnuplot
> aquaterm pdflib wxWidgets-3.0 wxWidgets_select grep hdf5-18 less pstoedit
> ImageMagick djvulibre urw-fonts plotutils qhull qrupdate
> --->  Configuring metis
> Error: org.macports.configure for port metis returned: configure failure:
> command execution failed
> Error: Failed to install metis
> Please see the log file for port metis for details:
> /opt/local/var/macports/logs/_Users_markadams_Codes_scienceports_math_metis/metis/main.log
> Error: The following dependencies were not installed: SuiteSparse metis
> arpack atlas clang-3.3 clang_select ld64 llvm-3.3 llvm_select gcc48
> cctools cctools-headers cloog isl gcc_select libgcc epstool fftw-3-single
> gnuplot aquaterm pdflib wxWidgets-3.0 wxWidgets_select grep hdf5-18 less
> pstoedit ImageMagick djvulibre urw-fonts plotutils qhull qrupdate
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port octave failed
> 12:56 1  ~$ cat
> /opt/local/var/macports/logs/_Users_markadams_Codes_scienceports_math_metis/metis/main.log
> version:1
> :debug:main changing euid/egid - current euid: 0 - current egid: 0
> :debug:main egid changed to: 501
> :debug:main euid changed to: 503
> :debug:main Executing org.macports.main (metis)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.archivefetch (metis)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.fetch (metis)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.checksum (metis)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.extract (metis)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.patch (metis)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:configure configure phase started at Mon Dec 23 12:56:39 EST 2013
> :notice:configure --->  Configuring metis
> :debug:configure Using compiler 'Xcode Clang'
> :debug:configure Executing proc-pre-org.macports.configure-configure-0
> :debug:configure Executing org.macports.configure (metis)
> :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe
> -Os -mtune=native' CPPFLAGS='-I/opt/local/include -mtune=native'
> CXXFLAGS='-pipe -Os -mtune=native' LIBRARY_PATH='/opt/local/lib'
> MACOSX_DEPLOYMENT_TARGET='10.8' CXX='clang++'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/.CC_PRINT_OPTIONS'
> F90FLAGS='-pipe -Os -mtune=native' LDFLAGS='-L/opt/local/lib
> -Wl,-headerpad_max_install_names' __CFPREFERENCES_AVOID_DAEMON='1'
> FCFLAGS='-pipe -Os -mtune=native' OBJC='clang' OBJCXX='/usr/bin/clang++'
> INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -Os' OBJCXXFLAGS='-pipe
> -Os' FFLAGS='-pipe -Os -mtune=native' CC_PRINT_OPTIONS='YES' CC='clang'
> :debug:configure Assembled command: 'cd
> "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2"
> && cmake -DCMAKE_INSTALL_PREFIX=/opt/local
> -DGKLIB_PATH=/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/GKlib
> -DSHARED=1 -DMETIS_USE_DOUBLEPRECISION=1 -DCMAKE_OSX_ARCHITECTURES=""
> -DCMAKE_OSX_SYSROOT=/'
> :debug:configure Executing command line:  cd
> "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2"
> && cmake -DCMAKE_INSTALL_PREFIX=/opt/local
> -DGKLIB_PATH=/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/GKlib
> -DSHARED=1 -DMETIS_USE_DOUBLEPRECISION=1 -DCMAKE_OSX_ARCHITECTURES=""
> -DCMAKE_OSX_SYSROOT=/
> :info:configure -- The C compiler identification is Clang 4.0.0
> :info:configure -- The CXX compiler identification is Clang 4.0.0
> :info:configure CMake Error at
> /opt/local/share/cmake-2.8/Modules/Platform/Darwin.cmake:211 (message):
> :info:configure   CMAKE_OSX_DEPLOYMENT_TARGET is '10.8' but
> CMAKE_OSX_SYSROOT:
> :info:configure
> :info:configure    "/"
> :info:configure
> :info:configure   is not set to a MacOSX SDK with a recognized version.
> Either set
> :info:configure   CMAKE_OSX_SYSROOT to a valid SDK or set
> CMAKE_OSX_DEPLOYMENT_TARGET to
> :info:configure   empty.
> :info:configure Call Stack (most recent call first):
> :info:configure
> /opt/local/share/cmake-2.8/Modules/CMakeSystemSpecificInformation.cmake:36
> (include)
> :info:configure   CMakeLists.txt:2 (project)
> :info:configure
> :info:configure
> :info:configure -- Configuring incomplete, errors occurred!
> :info:configure See also
> "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/CMakeFiles/CMakeOutput.log".
> :info:configure Command failed:  cd
> "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2"
> && cmake -DCMAKE_INSTALL_PREFIX=/opt/local
> -DGKLIB_PATH=/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/GKlib
> -DSHARED=1 -DMETIS_USE_DOUBLEPRECISION=1 -DCMAKE_OSX_ARCHITECTURES=""
> -DCMAKE_OSX_SYSROOT=/
> :info:configure Exit code: 1
> :error:configure org.macports.configure for port metis returned:
> configure failure: command execution failed
> :debug:configure Error code: NONE
> :debug:configure Backtrace: configure failure: command execution failed
>     while executing
> "$procedure $targetname"
> :info:configure Warning: targets not executed for metis:
> org.macports.activate org.macports.configure org.macports.build
> org.macports.destroot org.macports.install
> :error:configure Failed to install metis
> :debug:configure couldn't open
> "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
> no such file or directory
>     while executing
> "open [file join $dir tclIndex]"
> :notice:configure Please see the log file for port metis for details:
> /opt/local/var/macports/logs/_Users_markadams_Codes_scienceports_math_metis/metis/main.log
> 12:56  ~$

New description:

 I get this error when I try to install Octave.  I have OSX 10.8.5 and
 XCode 5.0.2.  Any ideas?
 Thanks,
 Mark

 {{{
 12:56  ~$  sudo port install octave +atlas+docs
 Warning: No port clang found in the index.
 --->  Computing dependencies for octave
 --->  Dependencies to be installed: SuiteSparse metis arpack atlas
 clang-3.3 clang_select ld64 llvm-3.3 llvm_select gcc48 cctools cctools-
 headers cloog isl gcc_select libgcc epstool fftw-3-single gnuplot aquaterm
 pdflib wxWidgets-3.0 wxWidgets_select grep hdf5-18 less pstoedit
 ImageMagick djvulibre urw-fonts plotutils qhull qrupdate
 --->  Configuring metis
 Error: org.macports.configure for port metis returned: configure failure:
 command execution failed
 Error: Failed to install metis
 Please see the log file for port metis for details:
 /opt/local/var/macports/logs/_Users_markadams_Codes_scienceports_math_metis/metis/main.log
 Error: The following dependencies were not installed: SuiteSparse metis
 arpack atlas clang-3.3 clang_select ld64 llvm-3.3 llvm_select gcc48
 cctools cctools-headers cloog isl gcc_select libgcc epstool fftw-3-single
 gnuplot aquaterm pdflib wxWidgets-3.0 wxWidgets_select grep hdf5-18 less
 pstoedit ImageMagick djvulibre urw-fonts plotutils qhull qrupdate
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port octave failed
 12:56 1  ~$ cat
 /opt/local/var/macports/logs/_Users_markadams_Codes_scienceports_math_metis/metis/main.log
 version:1
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 503
 :debug:main Executing org.macports.main (metis)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.archivefetch (metis)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (metis)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (metis)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (metis)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (metis)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:configure configure phase started at Mon Dec 23 12:56:39 EST 2013
 :notice:configure --->  Configuring metis
 :debug:configure Using compiler 'Xcode Clang'
 :debug:configure Executing proc-pre-org.macports.configure-configure-0
 :debug:configure Executing org.macports.configure (metis)
 :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -Os
 -mtune=native' CPPFLAGS='-I/opt/local/include -mtune=native'
 CXXFLAGS='-pipe -Os -mtune=native' LIBRARY_PATH='/opt/local/lib'
 MACOSX_DEPLOYMENT_TARGET='10.8' CXX='clang++'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/.CC_PRINT_OPTIONS'
 F90FLAGS='-pipe -Os -mtune=native' LDFLAGS='-L/opt/local/lib
 -Wl,-headerpad_max_install_names' __CFPREFERENCES_AVOID_DAEMON='1'
 FCFLAGS='-pipe -Os -mtune=native' OBJC='clang' OBJCXX='/usr/bin/clang++'
 INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -Os' OBJCXXFLAGS='-pipe
 -Os' FFLAGS='-pipe -Os -mtune=native' CC_PRINT_OPTIONS='YES' CC='clang'
 :debug:configure Assembled command: 'cd
 "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2"
 && cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DGKLIB_PATH=/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/GKlib
 -DSHARED=1 -DMETIS_USE_DOUBLEPRECISION=1 -DCMAKE_OSX_ARCHITECTURES=""
 -DCMAKE_OSX_SYSROOT=/'
 :debug:configure Executing command line:  cd
 "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2"
 && cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DGKLIB_PATH=/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/GKlib
 -DSHARED=1 -DMETIS_USE_DOUBLEPRECISION=1 -DCMAKE_OSX_ARCHITECTURES=""
 -DCMAKE_OSX_SYSROOT=/
 :info:configure -- The C compiler identification is Clang 4.0.0
 :info:configure -- The CXX compiler identification is Clang 4.0.0
 :info:configure CMake Error at
 /opt/local/share/cmake-2.8/Modules/Platform/Darwin.cmake:211 (message):
 :info:configure   CMAKE_OSX_DEPLOYMENT_TARGET is '10.8' but
 CMAKE_OSX_SYSROOT:
 :info:configure
 :info:configure    "/"
 :info:configure
 :info:configure   is not set to a MacOSX SDK with a recognized version.
 Either set
 :info:configure   CMAKE_OSX_SYSROOT to a valid SDK or set
 CMAKE_OSX_DEPLOYMENT_TARGET to
 :info:configure   empty.
 :info:configure Call Stack (most recent call first):
 :info:configure
 /opt/local/share/cmake-2.8/Modules/CMakeSystemSpecificInformation.cmake:36
 (include)
 :info:configure   CMakeLists.txt:2 (project)
 :info:configure
 :info:configure
 :info:configure -- Configuring incomplete, errors occurred!
 :info:configure See also
 "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/CMakeFiles/CMakeOutput.log".
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2"
 && cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DGKLIB_PATH=/opt/local/var/macports/build/_Users_markadams_Codes_scienceports_math_metis/metis/work/metis-5.0.2/GKlib
 -DSHARED=1 -DMETIS_USE_DOUBLEPRECISION=1 -DCMAKE_OSX_ARCHITECTURES=""
 -DCMAKE_OSX_SYSROOT=/
 :info:configure Exit code: 1
 :error:configure org.macports.configure for port metis returned: configure
 failure: command execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
     while executing
 "$procedure $targetname"
 :info:configure Warning: targets not executed for metis:
 org.macports.activate org.macports.configure org.macports.build
 org.macports.destroot org.macports.install
 :error:configure Failed to install metis
 :debug:configure couldn't open
 "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
 no such file or directory
     while executing
 "open [file join $dir tclIndex]"
 :notice:configure Please see the log file for port metis for details:
 /opt/local/var/macports/logs/_Users_markadams_Codes_scienceports_math_metis/metis/main.log
 12:56  ~$
 }}}

--

Comment:

 In the future, please use WikiFormatting, and fill in the Port field of
 the failed port. Also, attach the complete main.log after cleaning the
 port instead of pasting it inline.

-- 
Ticket URL: <https://trac.macports.org/ticket/41898#comment:1>
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