[MacPorts] #41915: gibbslda @0.2 build failed
MacPorts
noreply at macports.org
Fri Dec 27 00:54:05 PST 2013
#41915: gibbslda @0.2 build failed
-----------------------+-------------------
Reporter: cihanb@… | Owner: hum@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.2.1
Resolution: | Keywords:
Port: gibbslda |
-----------------------+-------------------
Comment (by cihanb@…):
I don't know how to edit the Port field and the CC fields. When I click
'modify', it sends me to the comment box.
I already compiled this by editing the source code for my own purposes.
I'm just trying to help the community.
I'm also unfamiliar with WikiFormatting and unwilling to sift through
tedious documentation for a simple bug report.
Here I'm copying and pasting the entire log after cleaning the port.
Hopefully the formatting will be ok.
{{{
version:1
:debug:clean gibbslda has no conflicts
:debug:main Executing org.macports.main (gibbslda)
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 502
:debug:archivefetch archivefetch phase started at Fri Dec 27 10:48:38 EET
2013
:msg:archivefetch ---> Fetching archive for gibbslda
:debug:archivefetch Executing org.macports.archivefetch (gibbslda)
:debug:archivefetch euid/egid changed to: 0/0
:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
:debug:archivefetch euid/egid changed to: 502/501
:info:archivefetch ---> gibbslda-0.2_0.darwin_13.x86_64.tbz2 doesn't seem
to exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch ---> Attempting to fetch
gibbslda-0.2_0.darwin_13.x86_64.tbz2 from
http://mse.uk.packages.macports.org/sites/packages.macports.org/gibbslda
:debug:archivefetch Fetching archive failed:: The requested URL returned
error: 404 Not Found
:msg:archivefetch ---> Attempting to fetch
gibbslda-0.2_0.darwin_13.x86_64.tbz2 from
http://lil.fr.packages.macports.org/gibbslda
:debug:archivefetch Fetching archive failed:: The requested URL returned
error: 404 Not Found
:msg:archivefetch ---> Attempting to fetch
gibbslda-0.2_0.darwin_13.x86_64.tbz2 from
http://packages.macports.org/gibbslda
:debug:archivefetch Fetching archive failed:: The requested URL returned
error: 404 Not Found
:debug:archivefetch Privilege de-escalation not attempted as not running
as root.
:debug:fetch fetch phase started at Fri Dec 27 10:48:43 EET 2013
:notice:fetch ---> Fetching distfiles for gibbslda
:debug:fetch Executing org.macports.fetch (gibbslda)
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Fri Dec 27 10:48:43 EET 2013
:notice:checksum ---> Verifying checksums for gibbslda
:debug:checksum Executing org.macports.checksum (gibbslda)
:info:checksum ---> Checksumming GibbsLDA++-0.2.tar.gz
:debug:checksum Correct (rmd160) checksum for GibbsLDA++-0.2.tar.gz
:debug:checksum Correct (sha256) checksum for GibbsLDA++-0.2.tar.gz
:debug:checksum Privilege de-escalation not attempted as not running as
root.
:debug:extract extract phase started at Fri Dec 27 10:48:43 EET 2013
:notice:extract ---> Extracting gibbslda
:debug:extract Executing org.macports.extract (gibbslda)
:info:extract ---> Extracting GibbsLDA++-0.2.tar.gz
:debug:extract setting option extract.args to
'/opt/local/var/macports/distfiles/gibbslda/GibbsLDA++-0.2.tar.gz'
:debug:extract Environment: CPATH='/opt/local/include'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/.CC_PRINT_OPTIONS'
LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
MACOSX_DEPLOYMENT_TARGET='10.9'
:debug:extract Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work"
&& /usr/bin/gzip -dc
'/opt/local/var/macports/distfiles/gibbslda/GibbsLDA++-0.2.tar.gz' |
/usr/bin/tar -xf -'
:debug:extract Executing command line: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work"
&& /usr/bin/gzip -dc
'/opt/local/var/macports/distfiles/gibbslda/GibbsLDA++-0.2.tar.gz' |
/usr/bin/tar -xf -
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work
to macports
:debug:extract euid/egid changed to: 502/501
:debug:extract Executing proc-post-org.macports.extract-extract-0
:info:extract make -C src/ -f Makefile clean
:info:extract rm strtokenizer.o dataset.o utils.o model.o
:info:extract rm lda
:debug:extract Privilege de-escalation not attempted as not running as
root.
:debug:patch patch phase started at Fri Dec 27 10:48:44 EET 2013
:debug:patch Executing org.macports.patch (gibbslda)
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Fri Dec 27 10:48:44 EET 2013
:notice:configure ---> Configuring gibbslda
:debug:configure Using compiler 'Xcode Clang'
:debug:configure Executing org.macports.configure (gibbslda)
:debug:configure Privilege de-escalation not attempted as not running as
root.
:debug:build build phase started at Fri Dec 27 10:48:44 EET 2013
:notice:build ---> Building gibbslda
:debug:build Executing org.macports.build (gibbslda)
:debug:build Environment: CPATH='/opt/local/include'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/.CC_PRINT_OPTIONS'
LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
MACOSX_DEPLOYMENT_TARGET='10.9'
:debug:build Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/GibbsLDA++-0.2"
&& /usr/bin/make -j4 -w all CC="/usr/bin/clang++ -Os -arch x86_64"'
:debug:build Executing command line: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/GibbsLDA++-0.2"
&& /usr/bin/make -j4 -w all CC="/usr/bin/clang++ -Os -arch x86_64"
:info:build make: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/GibbsLDA++-0.2'
:info:build make -C src/ -f Makefile all
:info:build make[1]: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/GibbsLDA++-0.2/src'
:info:build /usr/bin/clang++ -Os -arch x86_64 -c -o strtokenizer.o
strtokenizer.cpp
:info:build /usr/bin/clang++ -Os -arch x86_64 -c -o dataset.o dataset.cpp
:info:build /usr/bin/clang++ -Os -arch x86_64 -c -o utils.o utils.cpp
:info:build /usr/bin/clang++ -Os -arch x86_64 -c -o model.o model.cpp
:info:build dataset.cppmodel.cpp:40:27:240:: warning: 49: warning: format
specifies type 'int' but the argument has type 'const_pointer' (aka 'const
char *') [-Wformat]
:info:build format specifies type 'int' but the argument has type
'size_type' (aka 'unsigned long') [-Wformat]
:info:build fprintf(fout, "%d\n", pword2id->size());
:info:build ~~ ^~~~~~~~~~~~~~~~
:info:build %lu
:info:build printf("Cannot open file %d to load model!\n",
filename.c_str());
:info:build ~~
^~~~~~~~~~~~~~~~
:info:build %s
:info:build utils.cpp:69:14: error: use of undeclared identifier 'atof';
did you mean 'stof'?
:info:build alpha = atof(argv[++i]);
:info:build ^~~~
:info:build stof
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3995:13:
note: 'stof' declared here
:info:build float stof (const string& __str, size_t* __idx = 0);
:info:build ^
:info:build utils.cpp:72:13: error: use of undeclared identifier 'atof';
did you mean 'stof'?
:info:build beta = atof(argv[++i]);
:info:build ^~~~
:info:build stof
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3995:13:
note: 'stof' declared here
:info:build float stof (const string& __str, size_t* __idx = 0);
:info:build ^
:info:build utils.cpp:75:10: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build K = atoi(argv[++i]);
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build utils.cpp:78:15: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build niters = atoi(argv[++i]);
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build utils.cpp:81:17: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build savestep = atoi(argv[++i]);
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build utils.cpp:84:15: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build twords = atoi(argv[++i]);
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build utils.cpp:270:22: error: use of undeclared identifier 'atof';
did you mean 'stof'?
:info:build pmodel->alpha = atof(optval.c_str());
:info:build ^~~~
:info:build stof
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3995:13:
note: 'stof' declared here
:info:build float stof (const string& __str, size_t* __idx = 0);
:info:build ^
:info:build utils.cpp:273:21: error: use of undeclared identifier 'atof';
did you mean 'stof'?
:info:build pmodel->beta = atof(optval.c_str());
:info:build ^~~~
:info:build stof
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3995:13:
note: 'stof' declared here
:info:build float stof (const string& __str, size_t* __idx = 0);
:info:build ^
:info:build utils.cpp:276:18: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build pmodel->K = atoi(optval.c_str());
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build utils.cpp:279:18: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build pmodel->M = atoi(optval.c_str());
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build utils.cpp:282:18: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build pmodel->V = atoi(optval.c_str());
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build utils.cpp:285:22: error: use of undeclared identifier 'atoi';
did you mean 'stoi'?
:info:build pmodel->liter = atoi(optval.c_str());
:info:build ^~~~
:info:build stoi
:info:build
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/string:3989:20:
note: 'stoi' declared here
:info:build int stoi (const string& __str, size_t* __idx =
0, int __base = 10);
:info:build ^
:info:build 12 errors generated.
:info:build make[1]: *** [utils.o] Error 1
:info:build make[1]: *** Waiting for unfinished jobs....
:info:build 1 warning generated.
:info:build 1 warning generated.
:info:build make[1]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/GibbsLDA++-0.2/src'
:info:build make: *** [all] Error 2
:info:build make: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/GibbsLDA++-0.2'
:info:build Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/work/GibbsLDA++-0.2"
&& /usr/bin/make -j4 -w all CC="/usr/bin/clang++ -Os -arch x86_64"
:info:build Exit code: 2
:error:build org.macports.build for port gibbslda returned: command
execution failed
:debug:build Error code: CHILDSTATUS 15706 2
:debug:build Backtrace: command execution failed
while executing
"system -nice 0 $fullcmdstring"
("eval" body line 1)
invoked from within
"eval system $notty $nice \$fullcmdstring"
invoked from within
"command_exec build"
(procedure "portbuild::build_main" line 8)
invoked from within
"$procedure $targetname"
:info:build Warning: targets not executed for gibbslda:
org.macports.activate org.macports.build org.macports.destroot
org.macports.install
:notice:build Please see the log file for port gibbslda for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_gibbslda/gibbslda/main.log
}}}
--
Ticket URL: <https://trac.macports.org/ticket/41915#comment:5>
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