[MacPorts] #41766: py27-numpy @1.8.0_2 +atlas +gcc48 compile error - build failure
MacPorts
noreply at macports.org
Mon Dec 30 07:36:07 PST 2013
#41766: py27-numpy @1.8.0_2 +atlas +gcc48 compile error - build failure
--------------------------------+-------------------
Reporter: freezingmariner@… | Owner: dh@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.2.1
Resolution: | Keywords:
Port: py-numpy |
--------------------------------+-------------------
Comment (by kaplan@…):
Replying to [comment:2 michaelld@…]:
> Did you maybe update the OS to 10.9 without
[http://trac.macports.org/wiki/Migration migrating MacPorts]? If you did
not yet do the migration, then I highly recommend you do what that page
says.
>
> If you did, then I'd recommend the following:
> {{{
> sudo port -f uninstall gcc48
> sudo port clean py27-numpy gcc48
> sudo port installed gcc48
> sudo port install py27-numpy +atlas +gcc48
> }}}
> and see if that works.
It does not work :
apcmc143[140]:~> sudo port install py27-numpy +atlas +gcc48
Password:
---> Computing dependencies for py27-numpy
---> Dependencies to be installed: atlas
---> Configuring atlas
Selected C compiler: /opt/local/bin/gcc-mp-4.8
Selected F77 compiler: gfortran48
Warning: GCC compilers on MacOS do not support AVX: downgrading.
Error: org.macports.configure for port atlas returned: configure failure:
command execution failed
Error: Failed to install atlas
Please see the log file for port atlas for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
Error: The following dependencies were not installed: atlas
bellow : the last part of the log file
:debug:configure euid/egid changed to: 501/20
:debug:configure euid/egid changed to: 0/0
:debug:configure setting attributes on
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/workFIG/src/atlcomp.txt
:debug:configure euid/egid changed to: 501/20
:warn:configure GCC compilers on MacOS do not support AVX: downgrading.
:debug:configure Executing org.macports.configure (atlas)
:debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -Os
-m64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -Os -m64'
LIBRARY_PATH='/opt/local/X_DEPLOYMENT_TARGET='10.9'
CXX='/opt/local/bin/g++-mp-4.8'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_rballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS'
F90FLAGS='-pipe -Os -m64' LDFLAGS='-L/opt/local/lib
-Wl,-headerpad_max_install_names' FCFLAGS='-pipe -Os -m64' /local/bin/gcc-
mp-4.8' OBJCXX='/opt/local/bin/g++-mp-4.8' INSTALL='/usr/bin/install -c'
F90='/opt/local/bin/gfortran-mp-4.8' FC='/opt/local/bin/gfortran-mp-4.8'
FFL -Os -m64' OBJCXXFLAGS='-pipe -Os -m64' OBJCFLAGS='-pipe -Os -m64'
F77='/opt/local/bin/gfortran-mp-4.8' CC_PRINT_OPTIONS='YES'
CC='/opt/local/bin/gcc-mp-4.8'
:debug:configure Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/wouild"
&& ../configure --prefix=/opt/local --with-netlib-lapack-
tarfile=/opt/local/var/macports/distfiles/atlas/lapack-3.4.2.tgz -O 12 -v
5 --dylibs -Si omp 0 -C acgl/bin/gcc-mp-4.8 -A 25 -F acg '-fomit-frame-
pointer -mfpmath=sse -O3 -fno-schedule-insns2 -fPIC -msse4.2' -C if
/opt/local/bin/gfortran-mp-4.8 -F if '-fomit-frame-ppmath=sse -O3 -fno-
schedule-insns2 -fPIC -msse4.2' -Ss f77lib
/opt/local/lib/gcc48/libgfortran.dylib -b 64 -D c -DPentiumCPS=2400'
:debug:configure Executing command line: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlLAS/build"
&& ../configure --prefix=/opt/local --with-netlib-lapack-
tarfile=/opt/local/var/macports/distfiles/atlas/lapack-3.4.2.tgz -O 12 -v
5 --dylibs -Si omp 0 -/local/bin/gcc-mp-4.8 -A 25 -F acg '-fomit-frame-
pointer -mfpmath=sse -O3 -fno-schedule-insns2 -fPIC -msse4.2' -C if
/opt/local/bin/gfortran-mp-4.8 -F if '-fomit-frr -mfpmath=sse -O3 -fno-
schedule-insns2 -fPIC -msse4.2' -Ss f77lib
/opt/local/lib/gcc48/libgfortran.dylib -b 64 -D c -DPentiumCPS=2400
:info:configure /opt/local/bin/gcc-mp-4.8
-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlasS/build/..//CONFIG/include
-g -w -DATL_DYLIBS -c
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlask/ATLAS/build/..//CONFIG/src/atlconf_misc.c
:info:configure In file included from
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/d/..//CONFIG/src/atlconf_misc.c:30:0:
:info:configure
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//CONFIGtlconf.h:4:19:
fatal error: stdio.h: No such file or directory
:info:configure #include <stdio.h>
:info:configure ^
:info:configure compilation terminated.
:info:configure make: *** [atlconf_misc.o] Error 1
:info:configure ./xconfig -d s
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/bd
b
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build
-Si lapackref 1 -O 12 -DATL_DYLIBS -Si omp 0 -C acg /opt/local/bin/gcc-
mp-4.8 -A 25 -F acg '-fomit-frame-pointer -mfpmath=sse -O3 -fno-schedule-
insns2 -fPIC -msse4.2' -C if /opt/local/bn-mp-4.8 -F if '-fomit-frame-
pointer -mfpmath=sse -O3 -fno-schedule-insns2 -fPIC -msse4.2' -Ss f77lib
/opt/local/lib/gcc48/libgfortran.dylib -b 64 -D c -DPentiumCPS
:info:configure /bin/sh: line 1: ./xconfig: No such file or directory
:info:configure xconfig exited with 127
:info:configure Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/A"
&& ../configure --prefix=/opt/local --with-netlib-lapack-
tarfile=/opt/local/var/macports/distfiles/atlas/lapack-3.4.2.tgz -O 12 -v
5 --dylibs -Si omp 0 -C acg /opn/gcc-mp-4.8 -A 25 -F acg '-fomit-frame-
pointer -mfpmath=sse -O3 -fno-schedule-insns2 -fPIC -msse4.2' -C if
/opt/local/bin/gfortran-mp-4.8 -F if '-fomit-frame-pointh=sse -O3 -fno-
schedule-insns2 -fPIC -msse4.2' -Ss f77lib
/opt/local/lib/gcc48/libgfortran.dylib -b 64 -D c -DPentiumCPS=2400
:info:configure Exit code: 127
:error:configure org.macports.configure for port atlas returned: configure
failure: command execution failed
:debug:configure Error code: NONE
:debug:configure Backtrace: configure failure: command execution failed
while executing
"$procedure $targetname"
:info:configure Warning: targets not executed for atlas:
org.macports.activate org.macports.configure org.macports.build
org.macports.destroot org.macports.install
:error:configure Failed to install atlas
:debug:configure couldn't open
"/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
no such file or directory
while executing
"open [file join $dir tclIndex]"
--
Ticket URL: <https://trac.macports.org/ticket/41766#comment:3>
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