[MacPorts] #39774: py-openbabel lion install cd failure

MacPorts noreply at macports.org
Wed Jul 17 04:21:50 PDT 2013 

#39774: py-openbabel lion install cd failure
---------------------+--------------------------------
 Reporter:  ba306@…  |      Owner:  macports-tickets@…
     Type:  defect   |     Status:  new
 Priority:  Normal   |  Milestone:
Component:  ports    |    Version:  2.1.3
 Keywords:  python   |       Port:
---------------------+--------------------------------
 Hi,
 Trying to install python bindings for openbabel. Mac lion.
 Have been working on this for 4 days now!
 most recent error:

 version:1
 :debug:main Executing org.macports.main (openbabel)
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 502
 :debug:main Skipping completed org.macports.archivefetch (openbabel)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (openbabel)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (openbabel)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (openbabel)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (openbabel)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:configure configure phase started at Wed Jul 17 12:14:16 BST 2013
 :notice:configure --->  Configuring openbabel
 :debug:configure Using compiler 'Mac OS X clang'
 :debug:configure Executing proc-pre-org.macports.configure-configure-0
 :debug:configure Executing org.macports.configure (openbabel)
 :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2
 -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch
 x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.7'
 CXX='/usr/bin/clang++'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/.CC_PRINT_OPTIONS'
 F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64'
 OBJC='/usr/bin/clang' FCFLAGS='-pipe -O2 -m64' INSTALL='/usr/bin/install
 -c' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64'
 CC_PRINT_OPTIONS='YES' CC='/usr/bin/clang'
 :debug:configure Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1"
 && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
 -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules
 -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF
 -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64"
 -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""'
 :debug:configure Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1"
 && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
 -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules
 -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF
 -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64"
 -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""
 :info:configure -- Using included inchi library.
 :info:configure -- Could NOT find wxWidgets (missing:  wxWidgets_FOUND)
 :info:configure CMake Error at
 /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:97
 (message):
 :info:configure   Could NOT find PkgConfig (missing:
 PKG_CONFIG_EXECUTABLE)
 :info:configure Call Stack (most recent call first):
 :info:configure
 /opt/local/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:291
 (_FPHSA_FAILURE_MESSAGE)
 :info:configure
 /opt/local/share/cmake-2.8/Modules/FindPkgConfig.cmake:102
 (find_package_handle_standard_args)
 :info:configure   cmake/modules/FindCairo.cmake:23 (find_package)
 :info:configure   CMakeLists.txt:404 (find_package)
 :info:configure
 :info:configure
 :info:configure -- Configuring incomplete, errors occurred!
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/work/openbabel-2.3.1"
 && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local
 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON
 -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON
 -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib
 -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr"
 -DCMAKE_MODULE_PATH=/opt/local/share/cmake/modules
 -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DBUILD_GUI=OFF -DBUILD_TESTING=OFF
 -DPYTHON_BINDINGS=OFF -DCMAKE_OSX_ARCHITECTURES="x86_64"
 -DCMAKE_OSX_SYSROOT=/ -DCMAKE_OSX_DEPLOYMENT_TARGET=""
 :info:configure Exit code: 1
 :error:configure org.macports.configure for port openbabel returned:
 configure failure: command execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
     while executing
 "$procedure $targetname"
 :info:configure Warning: targets not executed for openbabel:
 org.macports.activate org.macports.configure org.macports.build
 org.macports.destroot org.macports.install
 :error:configure Failed to install openbabel
 :debug:configure couldn't open
 "/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
 no such file or directory
     while executing
 "open [file join $dir tclIndex]"
 :notice:configure Please see the log file for port openbabel for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_openbabel/openbabel/main.log

-- 
Ticket URL: <https://trac.macports.org/ticket/39774>
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