[MacPorts] #39580: arpack: configure: error: could not compile a MPI test program (was: Failed Installation of Octave - Please help me)
MacPorts
noreply at macports.org
Sat Jun 29 03:38:07 PDT 2013
#39580: arpack: configure: error: could not compile a MPI test program
-----------------------------+---------------------
Reporter: edhem.bajric@… | Owner: mmoll@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.1.3
Resolution: | Keywords:
Port: arpack |
-----------------------------+---------------------
Changes (by ryandesign@…):
* cc: edhem.bajric@… (removed)
* owner: macports-tickets@… => mmoll@…
* keywords: octave, arpack, failed installation =>
* port: arpack, octave => arpack
Old description:
> Dear madam, dear sir
>
> Recently, I tried to install octave via macports in order to prepare
> myself for a new job. The installation failed and I don't know why.
> Please halp me to fix this. I'd be very grateful. Thanks a lot in
> advance. The code and the log-file can be found below.
>
> Yours sincerely
> Edhem Bajric
>
> Edhem-Bajrics-MacBook:~ Edo$ sudo port install -y octave
> ---> Computing dependencies for octave
> ---> Dependencies to be installed: GraphicsMagick SuiteSparse arpack
> openmpi gcc47 cctools cloog isl gcc_select libmpc libstdcxx ppl glpk
> atlas fftw-3-single ftgl hdf5-18 metis qhull qrupdate
> For GraphicsMagick: skipping org.macports.main (dry run)
> For SuiteSparse: skipping org.macports.main (dry run)
> For cctools: skipping org.macports.main (dry run)
> For isl: skipping org.macports.main (dry run)
> For cloog: skipping org.macports.main (dry run)
> For gcc_select: skipping org.macports.main (dry run)
> For libmpc: skipping org.macports.main (dry run)
> For glpk: skipping org.macports.main (dry run)
> For ppl: skipping org.macports.main (dry run)
> For libstdcxx: skipping org.macports.main (dry run)
> For gcc47: skipping org.macports.main (dry run)
> For openmpi: skipping org.macports.main (dry run)
> For arpack: skipping org.macports.main (dry run)
> For atlas: skipping org.macports.main (dry run)
> For fftw-3-single: skipping org.macports.main (dry run)
> For ftgl: skipping org.macports.main (dry run)
> For hdf5-18: skipping org.macports.main (dry run)
> For metis: skipping org.macports.main (dry run)
> For qhull: skipping org.macports.main (dry run)
> For qrupdate: skipping org.macports.main (dry run)
> For octave: skipping org.macports.main (dry run)
> ---> Scanning binaries for linking errors: 100.0%
> ---> No broken files found.
> Edhem-Bajrics-MacBook:~ Edo$ sudo port install -s octave
> Password:
> ---> Computing dependencies for octave
> ---> Dependencies to be installed: GraphicsMagick SuiteSparse arpack
> openmpi gcc47 cctools cloog isl gcc_select libmpc libstdcxx ppl glpk
> atlas fftw-3-single ftgl hdf5-18 metis qhull qrupdate
> ---> Fetching distfiles for GraphicsMagick
> ---> Verifying checksum(s) for GraphicsMagick
> ---> Extracting GraphicsMagick
> ---> Configuring GraphicsMagick
> ---> Building GraphicsMagick
> ---> Staging GraphicsMagick into destroot
> ---> Installing GraphicsMagick @1.3.18_0+q8
> ---> Activating GraphicsMagick @1.3.18_0+q8
> ---> Cleaning GraphicsMagick
> ---> Fetching distfiles for SuiteSparse
> ---> Verifying checksum(s) for SuiteSparse
> ---> Extracting SuiteSparse
> ---> Applying patches to SuiteSparse
> ---> Configuring SuiteSparse
> ---> Building SuiteSparse
> ---> Staging SuiteSparse into destroot
> ---> Installing SuiteSparse @4.1.0_0
> ---> Activating SuiteSparse @4.1.0_0
> ---> Cleaning SuiteSparse
> ---> Fetching distfiles for cctools
> ---> Verifying checksum(s) for cctools
> ---> Extracting cctools
> ---> Applying patches to cctools
> ---> Configuring cctools
> ---> Building cctools
> ---> Staging cctools into destroot
> ---> Installing cctools @839_0+llvm32
> ---> Activating cctools @839_0+llvm32
> ---> Cleaning cctools
> ---> Fetching distfiles for isl
> ---> Verifying checksum(s) for isl
> ---> Extracting isl
> ---> Applying patches to isl
> ---> Configuring isl
> ---> Building isl
> ---> Staging isl into destroot
> ---> Installing isl @0.10_1
> ---> Activating isl @0.10_1
> ---> Cleaning isl
> ---> Fetching distfiles for cloog
> ---> Verifying checksum(s) for cloog
> ---> Extracting cloog
> ---> Applying patches to cloog
> ---> Configuring cloog
> ---> Building cloog
> ---> Staging cloog into destroot
> ---> Installing cloog @0.17.0_1
> ---> Activating cloog @0.17.0_1
> ---> Cleaning cloog
> ---> Fetching distfiles for gcc_select
> ---> Verifying checksum(s) for gcc_select
> ---> Extracting gcc_select
> ---> Configuring gcc_select
> ---> Building gcc_select
> ---> Staging gcc_select into destroot
> ---> Installing gcc_select @0.1_8
> ---> Activating gcc_select @0.1_8
> ---> Cleaning gcc_select
> ---> Fetching distfiles for libmpc
> ---> Verifying checksum(s) for libmpc
> ---> Extracting libmpc
> ---> Configuring libmpc
> ---> Building libmpc
> ---> Staging libmpc into destroot
> ---> Installing libmpc @1.0.1_0
> ---> Activating libmpc @1.0.1_0
> ---> Cleaning libmpc
> ---> Fetching distfiles for glpk
> ---> Verifying checksum(s) for glpk
> ---> Extracting glpk
> ---> Configuring glpk
> ---> Building glpk
> ---> Staging glpk into destroot
> ---> Installing glpk @4.48_0
> ---> Activating glpk @4.48_0
> ---> Cleaning glpk
> ---> Fetching distfiles for ppl
> ---> Verifying checksum(s) for ppl
> ---> Extracting ppl
> ---> Configuring ppl
> ---> Building ppl
> ---> Staging ppl into destroot
> ---> Installing ppl @1.0_1
> ---> Activating ppl @1.0_1
> ---> Cleaning ppl
> ---> Fetching distfiles for libstdcxx
> ---> Verifying checksum(s) for libstdcxx
> ---> Extracting libstdcxx
> ---> Applying patches to libstdcxx
> ---> Configuring libstdcxx
> ---> Building libstdcxx
> ---> Staging libstdcxx into destroot
> ---> Installing libstdcxx @4.8.1_0
> ---> Activating libstdcxx @4.8.1_0
> ---> Cleaning libstdcxx
> ---> Fetching distfiles for gcc47
> ---> Verifying checksum(s) for gcc47
> ---> Extracting gcc47
> ---> Applying patches to gcc47
> ---> Configuring gcc47
> ---> Building gcc47
> ---> Staging gcc47 into destroot
> ---> Installing gcc47 @4.7.3_0
> ---> Activating gcc47 @4.7.3_0
> ---> Cleaning gcc47
> ---> Fetching distfiles for openmpi
> ---> Verifying checksum(s) for openmpi
> ---> Extracting openmpi
> ---> Configuring openmpi
> ---> Building openmpi
> ---> Staging openmpi into destroot
> ---> Installing openmpi @1.7.1_0+gcc47
> ---> Activating openmpi @1.7.1_0+gcc47
> ---> Cleaning openmpi
> ---> Configuring arpack
> Error: org.macports.configure for port arpack returned: configure
> failure: command execution failed
> Error: Failed to install arpack
> Please see the log file for port arpack for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/main.log
> Error: The following dependencies were not installed: arpack atlas
> fftw-3-single ftgl hdf5-18 metis qhull qrupdate
> To report a bug, follow the instructions in the guide:
> http://guide.macports.org/#project.tickets
> Error: Processing of port octave failed
> Edhem-Bajrics-MacBook:~ Edo$ cp
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/main.log
> ~/Desktop/
New description:
Dear madam, dear sir
Recently, I tried to install octave via macports in order to prepare
myself for a new job. The installation failed and I don't know why. Please
halp me to fix this. I'd be very grateful. Thanks a lot in advance. The
code and the log-file can be found below.
Yours sincerely [[br]]
Edhem Bajric
{{{
Edhem-Bajrics-MacBook:~ Edo$ sudo port install -y octave
---> Computing dependencies for octave
---> Dependencies to be installed: GraphicsMagick SuiteSparse arpack
openmpi gcc47 cctools cloog isl gcc_select libmpc libstdcxx ppl glpk atlas
fftw-3-single ftgl hdf5-18 metis qhull qrupdate
For GraphicsMagick: skipping org.macports.main (dry run)
For SuiteSparse: skipping org.macports.main (dry run)
For cctools: skipping org.macports.main (dry run)
For isl: skipping org.macports.main (dry run)
For cloog: skipping org.macports.main (dry run)
For gcc_select: skipping org.macports.main (dry run)
For libmpc: skipping org.macports.main (dry run)
For glpk: skipping org.macports.main (dry run)
For ppl: skipping org.macports.main (dry run)
For libstdcxx: skipping org.macports.main (dry run)
For gcc47: skipping org.macports.main (dry run)
For openmpi: skipping org.macports.main (dry run)
For arpack: skipping org.macports.main (dry run)
For atlas: skipping org.macports.main (dry run)
For fftw-3-single: skipping org.macports.main (dry run)
For ftgl: skipping org.macports.main (dry run)
For hdf5-18: skipping org.macports.main (dry run)
For metis: skipping org.macports.main (dry run)
For qhull: skipping org.macports.main (dry run)
For qrupdate: skipping org.macports.main (dry run)
For octave: skipping org.macports.main (dry run)
---> Scanning binaries for linking errors: 100.0%
---> No broken files found.
Edhem-Bajrics-MacBook:~ Edo$ sudo port install -s octave
Password:
---> Computing dependencies for octave
---> Dependencies to be installed: GraphicsMagick SuiteSparse arpack
openmpi gcc47 cctools cloog isl gcc_select libmpc libstdcxx ppl glpk atlas
fftw-3-single ftgl hdf5-18 metis qhull qrupdate
---> Fetching distfiles for GraphicsMagick
---> Verifying checksum(s) for GraphicsMagick
---> Extracting GraphicsMagick
---> Configuring GraphicsMagick
---> Building GraphicsMagick
---> Staging GraphicsMagick into destroot
---> Installing GraphicsMagick @1.3.18_0+q8
---> Activating GraphicsMagick @1.3.18_0+q8
---> Cleaning GraphicsMagick
---> Fetching distfiles for SuiteSparse
---> Verifying checksum(s) for SuiteSparse
---> Extracting SuiteSparse
---> Applying patches to SuiteSparse
---> Configuring SuiteSparse
---> Building SuiteSparse
---> Staging SuiteSparse into destroot
---> Installing SuiteSparse @4.1.0_0
---> Activating SuiteSparse @4.1.0_0
---> Cleaning SuiteSparse
---> Fetching distfiles for cctools
---> Verifying checksum(s) for cctools
---> Extracting cctools
---> Applying patches to cctools
---> Configuring cctools
---> Building cctools
---> Staging cctools into destroot
---> Installing cctools @839_0+llvm32
---> Activating cctools @839_0+llvm32
---> Cleaning cctools
---> Fetching distfiles for isl
---> Verifying checksum(s) for isl
---> Extracting isl
---> Applying patches to isl
---> Configuring isl
---> Building isl
---> Staging isl into destroot
---> Installing isl @0.10_1
---> Activating isl @0.10_1
---> Cleaning isl
---> Fetching distfiles for cloog
---> Verifying checksum(s) for cloog
---> Extracting cloog
---> Applying patches to cloog
---> Configuring cloog
---> Building cloog
---> Staging cloog into destroot
---> Installing cloog @0.17.0_1
---> Activating cloog @0.17.0_1
---> Cleaning cloog
---> Fetching distfiles for gcc_select
---> Verifying checksum(s) for gcc_select
---> Extracting gcc_select
---> Configuring gcc_select
---> Building gcc_select
---> Staging gcc_select into destroot
---> Installing gcc_select @0.1_8
---> Activating gcc_select @0.1_8
---> Cleaning gcc_select
---> Fetching distfiles for libmpc
---> Verifying checksum(s) for libmpc
---> Extracting libmpc
---> Configuring libmpc
---> Building libmpc
---> Staging libmpc into destroot
---> Installing libmpc @1.0.1_0
---> Activating libmpc @1.0.1_0
---> Cleaning libmpc
---> Fetching distfiles for glpk
---> Verifying checksum(s) for glpk
---> Extracting glpk
---> Configuring glpk
---> Building glpk
---> Staging glpk into destroot
---> Installing glpk @4.48_0
---> Activating glpk @4.48_0
---> Cleaning glpk
---> Fetching distfiles for ppl
---> Verifying checksum(s) for ppl
---> Extracting ppl
---> Configuring ppl
---> Building ppl
---> Staging ppl into destroot
---> Installing ppl @1.0_1
---> Activating ppl @1.0_1
---> Cleaning ppl
---> Fetching distfiles for libstdcxx
---> Verifying checksum(s) for libstdcxx
---> Extracting libstdcxx
---> Applying patches to libstdcxx
---> Configuring libstdcxx
---> Building libstdcxx
---> Staging libstdcxx into destroot
---> Installing libstdcxx @4.8.1_0
---> Activating libstdcxx @4.8.1_0
---> Cleaning libstdcxx
---> Fetching distfiles for gcc47
---> Verifying checksum(s) for gcc47
---> Extracting gcc47
---> Applying patches to gcc47
---> Configuring gcc47
---> Building gcc47
---> Staging gcc47 into destroot
---> Installing gcc47 @4.7.3_0
---> Activating gcc47 @4.7.3_0
---> Cleaning gcc47
---> Fetching distfiles for openmpi
---> Verifying checksum(s) for openmpi
---> Extracting openmpi
---> Configuring openmpi
---> Building openmpi
---> Staging openmpi into destroot
---> Installing openmpi @1.7.1_0+gcc47
---> Activating openmpi @1.7.1_0+gcc47
---> Cleaning openmpi
---> Configuring arpack
Error: org.macports.configure for port arpack returned: configure failure:
command execution failed
Error: Failed to install arpack
Please see the log file for port arpack for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/main.log
Error: The following dependencies were not installed: arpack atlas
fftw-3-single ftgl hdf5-18 metis qhull qrupdate
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets
Error: Processing of port octave failed
Edhem-Bajrics-MacBook:~ Edo$ cp
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/main.log
~/Desktop/
}}}
--
--
Ticket URL: <https://trac.macports.org/ticket/39580#comment:2>
MacPorts <http://www.macports.org/>
Ports system for OS X
More information about the macports-tickets
mailing list