[MacPorts] #41289: Failure to build arpack @3.1.3 on Maverick w/ Undefined symbols
MacPorts
noreply at macports.org
Sat Nov 9 22:18:08 PST 2013
#41289: Failure to build arpack @3.1.3 on Maverick w/ Undefined symbols
----------------------------+--------------------------------
Reporter: steven.levis@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.2.1
Keywords: | Port:
----------------------------+--------------------------------
Here's the log file. Already tried clean --all and upgrade outdated
version:1
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 502
:debug:main Executing org.macports.main (arpack)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.archivefetch (arpack)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.fetch (arpack)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.checksum (arpack)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.extract (arpack)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.patch (arpack)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.configure (arpack)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Sat Nov 9 22:14:49 PST 2013
:notice:build ---> Building arpack
:debug:build Executing org.macports.build (arpack)
:debug:build Environment: CPATH='/opt/local/include'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work/.CC_PRINT_OPTIONS'
LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
MACOSX_DEPLOYMENT_TARGET='10.9'
:debug:build Assembled command: 'cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3" && /usr/bin/make -j8 -w all'
:debug:build Executing command line: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3" && /usr/bin/make -j8 -w all
:info:build make: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3'
:info:build Making all in UTIL
:info:build make[1]: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3/UTIL'
:info:build make[1]: Nothing to be done for `all'.
:info:build make[1]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3/UTIL'
:info:build Making all in SRC
:info:build make[1]: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3/SRC'
:info:build make[1]: Nothing to be done for `all'.
:info:build make[1]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3/SRC'
:info:build Making all in .
:info:build make[1]: Entering directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3'
:info:build /bin/sh ./libtool --tag=F77 --mode=link /opt/local/bin
/gfortran-mp-4.8 -O2 -m64 -no-undefined -version-info 2:0
/usr/lib/libblas.dylib /usr/lib/liblapack.dylib -o libarpack.la -rpath
/opt/local/lib ./SRC/libarpacksrc.la ./UTIL/libarpackutil.la -lblas
-llapack
:info:build libtool: link: /opt/local/bin/gfortran-mp-4.8 -dynamiclib -o
.libs/libarpack.2.dylib -Wl,-force_load,./SRC/.libs/libarpacksrc.a
-Wl,-force_load,./UTIL/.libs/libarpackutil.a -lblas -llapack -O2 -m64
-install_name /opt/local/lib/libarpack.2.dylib -compatibility_version 3
-current_version 3.0 -Wl,-single_module
:info:build Undefined symbols for architecture x86_64:
:info:build "_cgeqr2_", referenced from:
:info:build _cneupd_ in libarpacksrc.a(cneupd.o)
:info:build "_clacpy_", referenced from:
:info:build _cnapps_ in libarpacksrc.a(cnapps.o)
:info:build _cneigh_ in libarpacksrc.a(cneigh.o)
:info:build _cneupd_ in libarpacksrc.a(cneupd.o)
:info:build "_clahqr_", referenced from:
:info:build _cneigh_ in libarpacksrc.a(cneigh.o)
:info:build _cneupd_ in libarpacksrc.a(cneupd.o)
:info:build "_clanhs_", referenced from:
:info:build _cnaitr_ in libarpacksrc.a(cnaitr.o)
:info:build _cnapps_ in libarpacksrc.a(cnapps.o)
:info:build "_clarnv_", referenced from:
:info:build _cgetv0_ in libarpacksrc.a(cgetv0.o)
:info:build "_clartg_", referenced from:
:info:build _cnapps_ in libarpacksrc.a(cnapps.o)
:info:build "_clascl_", referenced from:
:info:build _cnaitr_ in libarpacksrc.a(cnaitr.o)
:info:build "_claset_", referenced from:
:info:build _cnapps_ in libarpacksrc.a(cnapps.o)
:info:build _cneigh_ in libarpacksrc.a(cneigh.o)
:info:build _cneupd_ in libarpacksrc.a(cneupd.o)
:info:build "_ctrevc_", referenced from:
:info:build _cneigh_ in libarpacksrc.a(cneigh.o)
:info:build _cneupd_ in libarpacksrc.a(cneupd.o)
:info:build "_ctrsen_", referenced from:
:info:build _cneupd_ in libarpacksrc.a(cneupd.o)
:info:build "_cunm2r_", referenced from:
:info:build _cneupd_ in libarpacksrc.a(cneupd.o)
:info:build "_dgeqr2_", referenced from:
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build _dseupd_ in libarpacksrc.a(dseupd.o)
:info:build "_dlabad_", referenced from:
:info:build _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
:info:build _dnaitr_ in libarpacksrc.a(dnaitr.o)
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build _znaitr_ in libarpacksrc.a(znaitr.o)
:info:build _znapps_ in libarpacksrc.a(znapps.o)
:info:build "_dlacpy_", referenced from:
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build _dneigh_ in libarpacksrc.a(dneigh.o)
:info:build _dsapps_ in libarpacksrc.a(dsapps.o)
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build _dseupd_ in libarpacksrc.a(dseupd.o)
:info:build "_dlaev2_", referenced from:
:info:build _dstqrb_ in libarpacksrc.a(dstqrb.o)
:info:build "_dlahqr_", referenced from:
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build "_dlamch_", referenced from:
:info:build _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
:info:build _dstqrb_ in libarpacksrc.a(dstqrb.o)
:info:build _dnaitr_ in libarpacksrc.a(dnaitr.o)
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build _dnaup2_ in libarpacksrc.a(dnaup2.o)
:info:build _dnaupd_ in libarpacksrc.a(dnaupd.o)
:info:build _dnconv_ in libarpacksrc.a(dnconv.o)
:info:build ...
:info:build "_dlanhs_", referenced from:
:info:build _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
:info:build _dnaitr_ in libarpacksrc.a(dnaitr.o)
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build "_dlanst_", referenced from:
:info:build _dstqrb_ in libarpacksrc.a(dstqrb.o)
:info:build "_dlanv2_", referenced from:
:info:build _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
:info:build "_dlapy2_", referenced from:
:info:build _dstqrb_ in libarpacksrc.a(dstqrb.o)
:info:build _dsortc_ in libarpacksrc.a(dsortc.o)
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build _dnaup2_ in libarpacksrc.a(dnaup2.o)
:info:build _dnconv_ in libarpacksrc.a(dnconv.o)
:info:build _dneigh_ in libarpacksrc.a(dneigh.o)
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build ...
:info:build "_dlarf_", referenced from:
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build "_dlarfg_", referenced from:
:info:build _dlaqrb_ in libarpacksrc.a(dlaqrb.o)
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build "_dlarnv_", referenced from:
:info:build _dgetv0_ in libarpacksrc.a(dgetv0.o)
:info:build "_dlartg_", referenced from:
:info:build _dstqrb_ in libarpacksrc.a(dstqrb.o)
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build _dsapps_ in libarpacksrc.a(dsapps.o)
:info:build "_dlascl_", referenced from:
:info:build _dstqrb_ in libarpacksrc.a(dstqrb.o)
:info:build _dnaitr_ in libarpacksrc.a(dnaitr.o)
:info:build _dsaitr_ in libarpacksrc.a(dsaitr.o)
:info:build "_dlaset_", referenced from:
:info:build _dnapps_ in libarpacksrc.a(dnapps.o)
:info:build _dsapps_ in libarpacksrc.a(dsapps.o)
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build "_dlasr_", referenced from:
:info:build _dstqrb_ in libarpacksrc.a(dstqrb.o)
:info:build "_dorm2r_", referenced from:
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build _dseupd_ in libarpacksrc.a(dseupd.o)
:info:build "_dsteqr_", referenced from:
:info:build _dseupd_ in libarpacksrc.a(dseupd.o)
:info:build "_dtrevc_", referenced from:
:info:build _dneigh_ in libarpacksrc.a(dneigh.o)
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build "_dtrsen_", referenced from:
:info:build _dneupd_ in libarpacksrc.a(dneupd.o)
:info:build "_sgeqr2_", referenced from:
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build _sseupd_ in libarpacksrc.a(sseupd.o)
:info:build "_slabad_", referenced from:
:info:build _slaqrb_ in libarpacksrc.a(slaqrb.o)
:info:build _snaitr_ in libarpacksrc.a(snaitr.o)
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build _cnaitr_ in libarpacksrc.a(cnaitr.o)
:info:build _cnapps_ in libarpacksrc.a(cnapps.o)
:info:build "_slacpy_", referenced from:
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build _sneigh_ in libarpacksrc.a(sneigh.o)
:info:build _ssapps_ in libarpacksrc.a(ssapps.o)
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build _sseupd_ in libarpacksrc.a(sseupd.o)
:info:build "_slaev2_", referenced from:
:info:build _sstqrb_ in libarpacksrc.a(sstqrb.o)
:info:build "_slahqr_", referenced from:
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build "_slamch_", referenced from:
:info:build _slaqrb_ in libarpacksrc.a(slaqrb.o)
:info:build _sstqrb_ in libarpacksrc.a(sstqrb.o)
:info:build _snaitr_ in libarpacksrc.a(snaitr.o)
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build _snaup2_ in libarpacksrc.a(snaup2.o)
:info:build _snaupd_ in libarpacksrc.a(snaupd.o)
:info:build _snconv_ in libarpacksrc.a(snconv.o)
:info:build ...
:info:build "_slanhs_", referenced from:
:info:build _slaqrb_ in libarpacksrc.a(slaqrb.o)
:info:build _snaitr_ in libarpacksrc.a(snaitr.o)
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build "_slanst_", referenced from:
:info:build _sstqrb_ in libarpacksrc.a(sstqrb.o)
:info:build "_slanv2_", referenced from:
:info:build _slaqrb_ in libarpacksrc.a(slaqrb.o)
:info:build "_slapy2_", referenced from:
:info:build _sstqrb_ in libarpacksrc.a(sstqrb.o)
:info:build _ssortc_ in libarpacksrc.a(ssortc.o)
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build _snaup2_ in libarpacksrc.a(snaup2.o)
:info:build _snconv_ in libarpacksrc.a(snconv.o)
:info:build _sneigh_ in libarpacksrc.a(sneigh.o)
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build ...
:info:build "_slarf_", referenced from:
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build "_slarfg_", referenced from:
:info:build _slaqrb_ in libarpacksrc.a(slaqrb.o)
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build "_slarnv_", referenced from:
:info:build _sgetv0_ in libarpacksrc.a(sgetv0.o)
:info:build "_slartg_", referenced from:
:info:build _sstqrb_ in libarpacksrc.a(sstqrb.o)
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build _ssapps_ in libarpacksrc.a(ssapps.o)
:info:build "_slascl_", referenced from:
:info:build _sstqrb_ in libarpacksrc.a(sstqrb.o)
:info:build _snaitr_ in libarpacksrc.a(snaitr.o)
:info:build _ssaitr_ in libarpacksrc.a(ssaitr.o)
:info:build "_slaset_", referenced from:
:info:build _snapps_ in libarpacksrc.a(snapps.o)
:info:build _ssapps_ in libarpacksrc.a(ssapps.o)
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build "_slasr_", referenced from:
:info:build _sstqrb_ in libarpacksrc.a(sstqrb.o)
:info:build "_sorm2r_", referenced from:
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build _sseupd_ in libarpacksrc.a(sseupd.o)
:info:build "_ssteqr_", referenced from:
:info:build _sseupd_ in libarpacksrc.a(sseupd.o)
:info:build "_strevc_", referenced from:
:info:build _sneigh_ in libarpacksrc.a(sneigh.o)
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build "_strsen_", referenced from:
:info:build _sneupd_ in libarpacksrc.a(sneupd.o)
:info:build "_zgeqr2_", referenced from:
:info:build _zneupd_ in libarpacksrc.a(zneupd.o)
:info:build "_zlacpy_", referenced from:
:info:build _znapps_ in libarpacksrc.a(znapps.o)
:info:build _zneigh_ in libarpacksrc.a(zneigh.o)
:info:build _zneupd_ in libarpacksrc.a(zneupd.o)
:info:build "_zlahqr_", referenced from:
:info:build _zneigh_ in libarpacksrc.a(zneigh.o)
:info:build _zneupd_ in libarpacksrc.a(zneupd.o)
:info:build "_zlanhs_", referenced from:
:info:build _znaitr_ in libarpacksrc.a(znaitr.o)
:info:build _znapps_ in libarpacksrc.a(znapps.o)
:info:build "_zlarnv_", referenced from:
:info:build _zgetv0_ in libarpacksrc.a(zgetv0.o)
:info:build "_zlartg_", referenced from:
:info:build _znapps_ in libarpacksrc.a(znapps.o)
:info:build "_zlascl_", referenced from:
:info:build _znaitr_ in libarpacksrc.a(znaitr.o)
:info:build "_zlaset_", referenced from:
:info:build _znapps_ in libarpacksrc.a(znapps.o)
:info:build _zneigh_ in libarpacksrc.a(zneigh.o)
:info:build _zneupd_ in libarpacksrc.a(zneupd.o)
:info:build "_ztrevc_", referenced from:
:info:build _zneigh_ in libarpacksrc.a(zneigh.o)
:info:build _zneupd_ in libarpacksrc.a(zneupd.o)
:info:build "_ztrsen_", referenced from:
:info:build _zneupd_ in libarpacksrc.a(zneupd.o)
:info:build "_zunm2r_", referenced from:
:info:build _zneupd_ in libarpacksrc.a(zneupd.o)
:info:build ld: symbol(s) not found for architecture x86_64
:info:build collect2: error: ld returned 1 exit status
:info:build make[1]: *** [libarpack.la] Error 1
:info:build make[1]: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3'
:info:build make: *** [all-recursive] Error 1
:info:build make: Leaving directory
`/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3'
:info:build Command failed: cd
"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/work
/arpack-ng-3.1.3" && /usr/bin/make -j8 -w all
:info:build Exit code: 2
:error:build org.macports.build for port arpack returned: command
execution failed
:debug:build Error code: CHILDSTATUS 60940 2
:debug:build Backtrace: command execution failed
while executing
"system -nice 0 $fullcmdstring"
("eval" body line 1)
invoked from within
"eval system $notty $nice \$fullcmdstring"
invoked from within
"command_exec build"
(procedure "portbuild::build_main" line 8)
invoked from within
"$procedure $targetname"
:info:build Warning: targets not executed for arpack:
org.macports.activate org.macports.build org.macports.destroot
org.macports.install
:error:build Failed to install arpack
:debug:build couldn't open
"/System/Library/Frameworks/Tcl.framework/Versions/8.5/Resources/tclIndex":
no such file or directory
while executing
"open [file join $dir tclIndex]"
:notice:build Please see the log file for port arpack for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_arpack/arpack/main.log
--
Ticket URL: <https://trac.macports.org/ticket/41289>
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