[MacPorts] #41376: atlas @3.10.1_5 +clang Build fails

MacPorts noreply at macports.org
Thu Nov 14 19:13:55 PST 2013 

#41376: atlas @3.10.1_5 +clang Build fails
---------------------+--------------------------------
 Reporter:  ralph@…  |      Owner:  macports-tickets@…
     Type:  defect   |     Status:  new
 Priority:  Normal   |  Milestone:
Component:  ports    |    Version:  2.2.1
 Keywords:           |       Port:
---------------------+--------------------------------
 Using Xcode 5.0.2, I get the following failure while trying to build atlas
 with the Xcode clang:


 {{{
 --->  Configuring atlas
 Selected C compiler: /usr/bin/clang
 Selected F77 compiler: gfortran48
 --->  Building atlas
 Error: org.macports.build for port atlas returned: command execution
 failed
 }}}

 Log shows

 {{{
 :info:configure Architecture configured as  Corei2 (26)
 :info:configure Mhz Probe = ' -O 12 -s 2 -m'
 :info:configure cmnd=make IRun_arch args="-v 5  -O 12 -s 2 -m" | fgrep
 'CPU MHZ='
 :info:configure
 :info:configure Clock rate configured as 2800Mhz
 :info:configure cmnd=make IRun_arch args="-v 5  -O 12 -s 2 -n" | fgrep
 'NCPU='
 :info:configure
 :info:configure Maximum number of threads configured as  8
 :info:configure cmnd=make IRun_pmake args="-v 5 -O 12 -t 8" | fgrep
 'PMAKE='
 :info:configure Parallel make command configured as '$(MAKE) -j 8'
 :info:configure cmnd=make IRun_arch args="-v 5  -O 12 -s 2 -t" | fgrep
 'CPU THROTTLE='
 :info:configure Cannot detect CPU throttling.
 :info:configure mkdir src bin tune interfaces
 :info:configure cd src ; mkdir testing auxil blas lapack pthreads threads
 :info:configure cd src/blas ; \
 :info:configure            mkdir f77reference reference gemv ger gemm kbmm
 \
 :info:configure                  level1 level2 level3 pklevel3
 :info:configure cd src/blas/reference ; mkdir level1 level2 level3
 :info:configure cd src/blas/level2 ; mkdir kernel
 :info:configure cd src/blas/pklevel3 ; mkdir gpmm sprk
 :info:configure cd src/blas/level3 ; mkdir rblas kernel
 :info:configure cd src/pthreads ; mkdir blas misc
 :info:configure cd src/pthreads/blas ; mkdir level1 level2 level3
 :info:configure cd src/threads ; mkdir blas lapack
 :info:configure cd src/threads/blas ; mkdir level3 level2
 :info:configure cd tune ; mkdir blas sysinfo lapack threads
 :info:configure cd tune/blas ; mkdir gemm gemv ger level1 level3
 :info:configure cd interfaces ; mkdir blas lapack
 :info:configure cd interfaces/lapack ; mkdir C F77
 :info:configure cd interfaces/lapack/C ; mkdir src testing
 :info:configure cd interfaces/lapack/F77 ; mkdir src testing
 :info:configure cd interfaces/blas ; mkdir C F77
 :info:configure cd interfaces/blas/C ; mkdir src testing
 :info:configure cd interfaces/blas/F77 ; mkdir src testing
 :info:configure cd interfaces/lapack ; mkdir C2F
 :info:configure cd interfaces/lapack/C2F ; mkdir src
 :info:configure mkdir ARCHS
 :info:configure /Applications/Xcode.app/Contents/Developer/usr/bin/make -f
 Make.top startup
 :info:configure Make.top:1: Make.inc: No such file or directory
 :info:configure Make.top:325: warning: overriding commands for target
 `/AtlasTest'
 :info:configure Make.top:76: warning: ignoring old commands for target
 `/AtlasTest'
 :info:configure make[1]: *** No rule to make target `Make.inc'.  Stop.
 :info:configure make: *** [startup] Error 2
 :info:configure mv: rename lib/Makefile to lib/Make.tmp: No such file or
 directory
 :info:configure ../configure: line 450: lib/Makefile: No such file or
 directory
 :info:configure ../configure: line 451: lib/Makefile: No such file or
 directory
 :info:configure ../configure: line 452: lib/Makefile: No such file or
 directory
 :info:configure ../configure: line 453: lib/Makefile: No such file or
 directory
 :info:configure ../configure: line 471: lib/Makefile: No such file or
 directory
 :info:configure ../configure: line 472: lib/Makefile: No such file or
 directory
 :info:configure ../configure: line 473: lib/Makefile: No such file or
 directory
 :info:configure ../configure: line 509: lib/Makefile: No such file or
 directory
 :info:configure DONE configure
 :debug:configure Executing proc-post-org.macports.configure-configure-0
 :debug:configure Patch to recursively remove directories on clean.
 :debug:configure Executing reinplace: /usr/bin/sed {s|rm -f|rm -rf|g} <
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/Makefile
 >@ file10
 :debug:configure euid/egid changed to: 0/0
 :debug:configure chowned
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/Makefile
 to macports
 :debug:configure euid/egid changed to: 504/503
 :debug:configure euid/egid changed to: 0/0
 :debug:configure setting attributes on
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/Makefile
 :debug:configure euid/egid changed to: 504/503
 :debug:configure Privilege de-escalation not attempted as not running as
 root.
 :debug:build build phase started at Fri Nov 15 11:08:19 CST 2013
 :notice:build --->  Building atlas
 :debug:build Executing org.macports.build (atlas)
 :debug:build port disallows a parallel build
 :debug:build Environment: CPATH='/opt/local/include'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS'
 LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
 MACOSX_DEPLOYMENT_TARGET='10.9' CC='/usr/bin/clang' CXX='/usr/bin/clang++'
 :debug:build Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
 && /usr/bin/make -w build'
 :debug:build Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
 && /usr/bin/make -w build
 :info:build make: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f
 Make.top build
 :info:build make[1]: Entering directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build Make.top:1: Make.inc: No such file or directory
 :info:build Make.top:325: warning: overriding commands for target
 `/AtlasTest'
 :info:build Make.top:76: warning: ignoring old commands for target
 `/AtlasTest'
 :info:build make[1]: *** No rule to make target `Make.inc'.  Stop.
 :info:build make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build make: *** [build] Error 2
 :info:build make: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
 && /usr/bin/make -w build
 :info:build Exit code: 2
 :error:build org.macports.build for port atlas returned: command execution
 failed
 :debug:build Error code: CHILDSTATUS 57635 2
 :debug:build Backtrace: command execution failed
     while executing
 "system -nice 0 $fullcmdstring"
     ("eval" body line 1)
     invoked from within
 "eval system $notty $nice \$fullcmdstring"
     invoked from within
 "command_exec build"
     (procedure "portbuild::build_main" line 8)
     invoked from within
 "$procedure $targetname"
 :info:build Warning: targets not executed for atlas: org.macports.activate
 org.macports.build org.macports.destroot org.macports.install
 :notice:build Please see the log file for port atlas for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log

 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/41376>
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