#40428: py27-scipy "broken files"
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Reporter: wimmer@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.2.0
Keywords: | Port:
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When installing scipy in a clean macports install (v2.2), macports
complains about linking errors:
{{{
---> Scanning binaries for linking errors
Could not open /opt/local/lib/gcc48/libgcc_s.1.dylib: Error opening or
reading file (referenced from
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/fftpack/_fftpack.so)
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/fftpack/_fftpack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/fftpack/convolve.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/integrate/_dop.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/integrate/_odepack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/integrate/_quadpack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/integrate/lsoda.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/integrate/vode.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/interpolate/_fitpack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/interpolate/dfitpack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/lib/blas/fblas.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/lib/lapack/calc_lwork.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/linalg/_fblas.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/linalg/_flapack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/linalg/_flinalg.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/linalg/calc_lwork.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/odr/__odrpack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/optimize/_cobyla.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/optimize/_lbfgsb.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/optimize/_minpack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/optimize/_nnls.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/optimize/_slsqp.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/optimize/minpack2.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/sparse/linalg/eigen/arpack/_arpack.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/sparse/linalg/isolve/_iterative.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/special/_ufuncs.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/special/specfun.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/stats/futil.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/stats/mvn.so as broken
DEBUG: Marking
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
/site-packages/scipy/stats/statlib.so as broken
}}}
This only happens when the precompiled version is installed. Installing
from source does not have these problems.
After finding the linking errors, macports then continues to recompile
gcc48 from source which takes ages. So, it does work in principle, but the
behavior is rather uncomfortable.
--
Ticket URL: <https://trac.macports.org/ticket/40428>
MacPorts <http://www.macports.org/>
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