[MacPorts] #43306: clustalx @2.1: error: implicit instantiation of undefined template 'std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >' (was: clustalx 2.1, build error)

[MacPorts]

#43306: clustalx @2.1: error: implicit instantiation of undefined template
'std::__1::basic_string<char, std::__1::char_traits<char>,
std::__1::allocator<char> >'
-----------------------+-------------------
  Reporter:  pst@…     |      Owner:  snc@…
      Type:  defect    |     Status:  new
  Priority:  Normal    |  Milestone:
 Component:  ports     |    Version:  2.2.1
Resolution:            |   Keywords:
      Port:  clustalx  |
-----------------------+-------------------
Changes (by ryandesign@…):

 * owner:  macports-tickets@… => snc@…
 * port:   => clustalx


Old description:

> I have a fresh install of macports. I did "sudo port install clustalx",
> got:
> Error: org.macports.build for port clustalx returned: command execution
> failed
> Please see the log file for port clustalx for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_clustalx/clustalx/main.log
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port clustalx failed
>
> Log attached.

New description:

 I have a fresh install of macports. I did "sudo port install clustalx",
 got:
 {{{
 Error: org.macports.build for port clustalx returned: command execution
 failed
 Please see the log file for port clustalx for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_clustalx/clustalx/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port clustalx failed
 }}}

 Log attached.

--

Comment:

 The first error in the log seems to be:
 {{{
 :info:build In file included from clustalW/general/VectorOutOfRange.cpp:9:
 :info:build clustalW/general/VectorOutOfRange.h:23:21: error: implicit
 instantiation of undefined template 'std::__1::basic_string<char,
 std::__1::char_traits<char>, std::__1::allocator<char> >'
 :info:build         std::string _name;
 :info:build                     ^
 :info:build
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/iosfwd:188:33:
 note: template is declared here
 :info:build     class _LIBCPP_TYPE_VIS_ONLY basic_string;
 :info:build                                 ^
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/43306#comment:1>
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