[MacPorts] #42404: Problems installing atlas
MacPorts
noreply at macports.org
Sun Feb 16 14:03:44 PST 2014
#42404: Problems installing atlas
----------------------------+---------------------
Reporter: phil.massey@… | Owner: vince@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.2.1
Resolution: | Keywords:
Port: atlas |
----------------------------+---------------------
Description changed by mk@…:
Old description:
> I'm attempting to install "atlas" on a new Mac Pro running 10.9.1. Here
> is what happens:
> {{{
> [frodo2:~] lmi% sudo port install atlas
> ---> Computing dependencies for atlas
> ---> Fetching archive for atlas
> ---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2
> from http://packages.macports.org/atlas
> ---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2
> from http://lil.fr.packages.macports.org/atlas
> ---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2
> from http://nue.de.packages.macports.org/macports/packages/atlas
> ---> Fetching distfiles for atlas
> ---> Verifying checksums for atlas
> ---> Extracting atlas
> ---> Applying patches to atlas
> ---> Configuring atlas
> Selected C compiler: /opt/local/bin/clang-mp-3.3
> Selected F77 compiler: gfortran48
> ---> Building atlas
> Error: org.macports.build for port atlas returned: command execution
> failed
> Please see the log file for port atlas for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
> To report a bug, follow the instructions in the guide:
> http://guide.macports.org/#project.tickets
> Error: Processing of port atlas failed
> }}}
>
> Here is the log:
>
> {{{
> version:1
> :debug:main epoch: in tree: 1 installed: 1
> :debug:main clang-3.3 3.3_2 exists in the ports tree
> :debug:main clang-3.3 3.3_2 +analyzer+python27 is the latest installed
> :debug:main clang-3.3 3.3_2 +analyzer+python27 is active
> :debug:main Merging existing variants '+analyzer+python27' into variants
> :debug:main new fully merged portvariants: analyzer + python27 +
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.3
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Executing variant python27 provides python27
> :debug:main Executing variant analyzer provides analyzer
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! clang-3.3 3.3_2 >= clang-3.3 3.3_2
> :debug:main epoch: in tree: 1 installed: 1
> :debug:main llvm-3.3 3.3_1 exists in the ports tree
> :debug:main llvm-3.3 3.3_1 is the latest installed
> :debug:main llvm-3.3 3.3_1 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.3
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! llvm-3.3 3.3_1 >= llvm-3.3 3.3_1
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main libffi 3.0.13_0 exists in the ports tree
> :debug:main libffi 3.0.13_0 is the latest installed
> :debug:main libffi 3.0.13_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! libffi 3.0.13_0 >= libffi 3.0.13_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main perl5 5.12.4_0 exists in the ports tree
> :debug:main perl5 5.12.4_0 +perl5_16 is the latest installed
> :debug:main perl5 5.12.4_0 +perl5_16 is active
> :debug:main Merging existing variants '+perl5_16' into variants
> :debug:main new fully merged portvariants: perl5_16 +
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main universal_variant is false, so not adding the default
> universal variant
> :debug:main Executing variant perl5_16 provides perl5_16
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! perl5 5.12.4_0 >= perl5 5.12.4_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main perl5.16 5.16.1_3 exists in the ports tree
> :debug:main perl5.16 5.16.1_3 is the latest installed
> :debug:main perl5.16 5.16.1_3 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5.16
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! perl5.16 5.16.1_3 >= perl5.16 5.16.1_3
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main gdbm 1.11_0 exists in the ports tree
> :debug:main gdbm 1.11_0 is the latest installed
> :debug:main gdbm 1.11_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/gdbm
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! gdbm 1.11_0 >= gdbm 1.11_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main gettext 0.18.3.2_0 exists in the ports tree
> :debug:main gettext 0.18.3.2_0 is the latest installed
> :debug:main gettext 0.18.3.2_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main compiler clang 500.2.79 not blacklisted because it doesn't
> match {clang < 211.10.1}
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! gettext 0.18.3.2_0 >= gettext 0.18.3.2_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main expat 2.1.0_0 exists in the ports tree
> :debug:main expat 2.1.0_0 is the latest installed
> :debug:main expat 2.1.0_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main libiconv 1.14_0 exists in the ports tree
> :debug:main libiconv 1.14_0 is the latest installed
> :debug:main libiconv 1.14_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main ncurses 5.9_2 exists in the ports tree
> :debug:main ncurses 5.9_2 is the latest installed
> :debug:main ncurses 5.9_2 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main llvm_select 0.2_0 exists in the ports tree
> :debug:main llvm_select 0.2_0 is the latest installed
> :debug:main llvm_select 0.2_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main universal_variant is false, so not adding the default
> universal variant
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! llvm_select 0.2_0 >= llvm_select 0.2_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main clang_select 0.1_0 exists in the ports tree
> :debug:main clang_select 0.1_0 is the latest installed
> :debug:main clang_select 0.1_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/clang_select
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main universal_variant is false, so not adding the default
> universal variant
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! clang_select 0.1_0 >= clang_select 0.1_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main ld64 136_2 exists in the ports tree
> :debug:main ld64 136_2 +llvm33 is the latest installed
> :debug:main ld64 136_2 +llvm33 is active
> :debug:main Merging existing variants '+llvm33' into variants
> :debug:main new fully merged portvariants: llvm33 +
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Executing variant llvm33 provides llvm33
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! ld64 136_2 >= ld64 136_2
> :debug:main epoch: in tree: 2 installed: 2
> :debug:main python27 2.7.6_0 exists in the ports tree
> :debug:main python27 2.7.6_0 is the latest installed
> :debug:main python27 2.7.6_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! python27 2.7.6_0 >= python27 2.7.6_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main zlib 1.2.8_0 exists in the ports tree
> :debug:main zlib 1.2.8_0 is the latest installed
> :debug:main zlib 1.2.8_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
> :debug:main epoch: in tree: 1 installed: 1
> :debug:main openssl 1.0.1f_0 exists in the ports tree
> :debug:main openssl 1.0.1f_0 is the latest installed
> :debug:main openssl 1.0.1f_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! openssl 1.0.1f_0 >= openssl 1.0.1f_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main sqlite3 3.8.3_1 exists in the ports tree
> :debug:main sqlite3 3.8.3_1 is the latest installed
> :debug:main sqlite3 3.8.3_1 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main adding the default universal variant
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! sqlite3 3.8.3_1 >= sqlite3 3.8.3_1
> :debug:main epoch: in tree: 20090923 installed: 20090923
> :debug:main libedit 20121213-3.0_0 exists in the ports tree
> :debug:main libedit 20121213-3.0_0 is the latest installed
> :debug:main libedit 20121213-3.0_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit
> 20121213-3.0_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main db46 4.6.21_9 exists in the ports tree
> :debug:main db46 4.6.21_9 is the latest installed
> :debug:main db46 4.6.21_9 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db46
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! db46 4.6.21_9 >= db46 4.6.21_9
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main db_select 0.1_2 exists in the ports tree
> :debug:main db_select 0.1_2 is the latest installed
> :debug:main db_select 0.1_2 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/db_select
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main universal_variant is false, so not adding the default
> universal variant
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! db_select 0.1_2 >= db_select 0.1_2
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main bzip2 1.0.6_0 exists in the ports tree
> :debug:main bzip2 1.0.6_0 is the latest installed
> :debug:main bzip2 1.0.6_0 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main Reading variant descriptions from
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
> :debug:main universal variant already exists, so not adding the default
> one
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
> :debug:main epoch: in tree: 0 installed: 0
> :debug:main python_select 0.3_3 exists in the ports tree
> :debug:main python_select 0.3_3 is the latest installed
> :debug:main python_select 0.3_3 is active
> :debug:main Merging existing variants '' into variants
> :debug:main new fully merged portvariants:
> :debug:main Changing to port directory:
> /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
> :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
> :debug:main universal_variant is false, so not adding the default
> universal variant
> :debug:main Running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Finished running callback
> portconfigure::add_automatic_compiler_dependencies
> :debug:main Running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main Finished running callback
> portbuild::add_automatic_buildsystem_dependencies
> :debug:main No need to upgrade! python_select 0.3_3 >= python_select
> 0.3_3
> :msg:main ---> Computing dependencies for atlas:info:main .:debug:main
> atlas has no conflicts
> :debug:main Searching for dependency: clang-3.3
> :debug:main Found Dependency: receipt exists for clang-3.3
> :msg:main
> :debug:main Executing org.macports.main (atlas)
> :debug:main changing euid/egid - current euid: 0 - current egid: 0
> :debug:main egid changed to: 501
> :debug:main euid changed to: 502
> :debug:main Skipping completed org.macports.archivefetch (atlas)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.fetch (atlas)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.checksum (atlas)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.extract (atlas)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.patch (atlas)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.configure (atlas)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:build build phase started at Fri Feb 7 15:46:50 MST 2014
> :notice:build ---> Building atlas
> :debug:build Executing org.macports.build (atlas)
> :debug:build port disallows a parallel build
> :debug:build Environment: CPATH='/opt/local/include'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS'
> LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES'
> MACOSX_DEPLOYMENT_TARGET='10.9' CC='/usr/bin/clang'
> CXX='/usr/bin/clang++'
> :debug:build Assembled command: 'cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
> && /usr/bin/make -w build'
> :debug:build Executing command line: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
> && /usr/bin/make -w build
> :info:build make: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f
> Make.top build
> :info:build make[1]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build cd bin/ ;
> /Applications/Xcode.app/Contents/Developer/usr/bin/make xatlas_build
> :info:build make[2]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build make[2]: `xatlas_build' is up to date.
> :info:build make[2]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1
> :info:build make[2]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build make[2]: *** No rule to make target
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//CONFIG/ARCHS/UNKNOWNx8664AVX.tar.bz2',
> needed by
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/ARCHS/UNKNOWNx8664AVX'.
> Stop.
> :info:build make[2]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build make[2]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build cd
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil
> ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -s
> ATL_buildinfo.o
> :info:build cd
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil
> ; /Applications/Xcode.app/Contents/Developer/usr/bin/make lib
> :info:build make[3]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil'
> :info:build cd
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo
> ; /Applications/Xcode.app/Contents/Developer/usr/bin/make
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h
> :info:build make[4]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
> :info:build
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo/xsyssum
> s
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h
> :info:build
> :info:build Read in L1 Cache size as = 32KB.
> :info:build make[5]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
> :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make
> RunMulAdd pre=s
> :info:build make[6]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
> :info:build ./xmasrch -p s -o res/sMULADD
> :info:build
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin/ATLrun.sh:
> line 4: 44893 Abort trap: 6 $atldir/$*
> :info:build make[7]: *** [xsma] Error 134
> :info:build Assertion failed: (!system(ln)), function matime, file
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//tune/sysinfo/masrch.c,
> line 108.
> :info:build Finding how many mflops required to get .025 second timings:
> :info:build 1: 2.000000e-04
> :info:build 2: 3.000000e-04
> :info:build 4: 6.000000e-04
> :info:build 8: 1.000000e-03
> :info:build 16: 3.000000e-03
> :info:build 32: 5.000000e-03
> :info:build 64: 1.000000e-02
> :info:build 128: 2.000000e-02
> :info:build 256: 4.000000e-02
> :info:build FORCE MFLOP=256, TIME=4.000000e-02
> :info:build
> :info:build FINDING USABLE NREG:
> :info:build 2: 1553.51
> :info:build 4: 3101.17
> :info:build 8: 6205.83
> :info:build 16: 6425.23
> :info:build 32: 7697.11
> :info:build 64: 7708.87
> :info:build 128: 6866.67
> :info:build
> :info:build 96: 7558.92
> :info:build make[6]: *** [RunMulAdd] Abort trap: 6
> :info:build make[6]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
> :info:build make[5]: *** [res/sMULADD] Error 2
> :info:build make[5]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
> :info:build Assertion failed: (system(fnam) == 0), function getfpinfo0,
> file
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//tune/sysinfo/GetSysSum.c,
> line 69.
> :info:build make[4]: ***
> [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h]
> Abort trap: 6
> :info:build make[4]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
> :info:build make[3]: ***
> [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h]
> Error 2
> :info:build make[3]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil'
> :info:build make[2]: *** [IStage1] Error 2
> :info:build make[2]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build ERROR 621 DURING CACHESIZE SEARCH!!. CHECK
> INSTALL_LOG/Stage1.log FOR DETAILS.
> :info:build make[2]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build cd
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build
> ; /Applications/Xcode.app/Contents/Developer/usr/bin/make error_report
> :info:build make[3]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f
> Make.top error_report
> :info:build make[4]: Entering directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
> :info:build /opt/local/bin/clang-mp-3.3 -v 2>&1 >>
> bin/INSTALL_LOG/ERROR.LOG
> :info:build clang version 3.3 (tags/RELEASE_33/final)
> :info:build Target: x86_64-apple-darwin13.0.3
> :info:build Thread model: posix
> :info:build /opt/local/bin/clang-mp-3.3 -V 2>&1 >>
> bin/INSTALL_LOG/ERROR.LOG
> :info:build clang: error: argument to '-V' is missing (expected 1 value)
> :info:build clang: error: no input files
> :info:build make[4]: [error_report] Error 1 (ignored)
> :info:build /opt/local/bin/clang-mp-3.3 --version 2>&1 >>
> bin/INSTALL_LOG/ERROR.LOG
> :info:build tar cf error_UNKNOWNx8664AVX.tar Make.inc bin/INSTALL_LOG/*
> :info:build bzip2 error_UNKNOWNx8664AVX.tar
> :info:build bzip2: Output file error_UNKNOWNx8664AVX.tar.bz2 already
> exists.
> :info:build make[4]: *** [error_report] Error 1
> :info:build make[4]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build make[3]: *** [error_report] Error 2
> :info:build make[3]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build make[2]: *** [error_report] Error 2
> :info:build make[2]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
> :info:build cat: ../../CONFIG/error.txt: No such file or directory
> :info:build cat: ../../CONFIG/error.txt: No such file or directory
> :info:build
> :info:build
> :info:build BEGIN STAGE 1-0-0: SYSTEM PROBE/AUX COMPILE at 15:46
> :info:build make[1]: *** [build] Error 255
> :info:build make[1]: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build make: *** [build] Error 2
> :info:build make: Leaving directory
> `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
> :info:build Command failed: cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
> && /usr/bin/make -w build
> :info:build Exit code: 2
> :error:build org.macports.build for port atlas returned: command
> execution failed
> :debug:build Error code: CHILDSTATUS 44769 2
> :debug:build Backtrace: command execution failed
> while executing
> "system -nice 0 $fullcmdstring"
> ("eval" body line 1)
> invoked from within
> "eval system $notty $nice \$fullcmdstring"
> invoked from within
> "command_exec build"
> (procedure "portbuild::build_main" line 8)
> invoked from within
> "$procedure $targetname"
> :info:build Warning: targets not executed for atlas:
> org.macports.activate org.macports.build org.macports.destroot
> org.macports.install
> :notice:build Please see the log file for port atlas for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
> }}}
New description:
I'm attempting to install "atlas" on a new Mac Pro running 10.9.1. Here
is what happens:
{{{
[frodo2:~] lmi% sudo port install atlas
---> Computing dependencies for atlas
---> Fetching archive for atlas
---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2
from http://packages.macports.org/atlas
---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2
from http://lil.fr.packages.macports.org/atlas
---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2
from http://nue.de.packages.macports.org/macports/packages/atlas
---> Fetching distfiles for atlas
---> Verifying checksums for atlas
---> Extracting atlas
---> Applying patches to atlas
---> Configuring atlas
Selected C compiler: /opt/local/bin/clang-mp-3.3
Selected F77 compiler: gfortran48
---> Building atlas
Error: org.macports.build for port atlas returned: command execution
failed
Please see the log file for port atlas for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
To report a bug, follow the instructions in the guide:
http://guide.macports.org/#project.tickets
Error: Processing of port atlas failed
}}}
--
--
Ticket URL: <https://trac.macports.org/ticket/42404#comment:3>
MacPorts <http://www.macports.org/>
Ports system for OS X
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