[MacPorts] #43482: PyMOL 1.6: Control Window broken

[MacPorts]

#43482: PyMOL 1.6: Control Window broken
------------------------------+-----------------------
  Reporter:  structures-it@…  |      Owner:  howarth@…
      Type:  defect           |     Status:  new
  Priority:  Normal           |  Milestone:
 Component:  ports            |    Version:  2.2.1
Resolution:                   |   Keywords:
      Port:  pymol            |
------------------------------+-----------------------

Comment (by structures-it@…):

 Replying to [comment:4 howarth.at.macports@…]:
 > [...]
 >
 > sudo port -d selfupdate
 > sudo port upgrade outdated
 >
 > [...]

 Unfortunately this didn't help.  Top window is still broken and crashes
 after a while.  That's what I see on the commandline:

 {{{
 $ /opt/local/bin/pymol
  PyMOL(TM) Molecular Graphics System, Version 1.7.1.1.
  Copyright (c) Schrodinger, LLC.
  All Rights Reserved.

     Created by Warren L. DeLano, Ph.D.

     PyMOL is user-supported open-source software.  Although some versions
     are freely available, PyMOL is not in the public domain.

     If PyMOL is helpful in your work or study, then please volunteer
     support for our ongoing efforts to create open and affordable
 scientific
     software by purchasing a PyMOL Maintenance and/or Support
 subscription.

     More information can be found at "http://www.pymol.org".

     Enter "help" for a list of commands.
     Enter "help <command-name>" for information on a specific command.

  Hit ESC anytime to toggle between text and graphics.

  Detected OpenGL version 2.0 or greater. Shaders available.
  Detected GLSL version 1.20.
  OpenGL graphics engine:
   GL_VENDOR:   ATI Technologies Inc.
   GL_RENDERER: AMD Radeon HD 6630M OpenGL Engine
   GL_VERSION:  2.1 ATI-7.32.12
  Adjusting settings to improve performance for ATI cards.
  Detected 4 CPU cores.  Enabled multithreaded rendering.
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSGetWindowBounds
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorFailure: Set a
 breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSGetSurfaceBounds
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSGetWindowBounds
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSGetSurfaceBounds
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSGetWindowBounds
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSGetSurfaceBounds
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 Jun  2 19:11:09 myhost Python[21648] <Error>: kCGErrorIllegalArgument:
 CGSBindSurface: Invalid window 0x14c8
 XIO:  fatal IO error 35 (Resource temporarily unavailable) on X server
 "/tmp/launch-k3nAoi/org.x:0"
       after 50 requests (50 known processed) with 5 events remaining.
  PyMOL: abrupt program termination.
 $
 }}}

 And that's how the top window looks like:

 [[Image(pymol_1.7_controlwindow_broken.png)]]

-- 
Ticket URL: <https://trac.macports.org/ticket/43482#comment:5>
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