[MacPorts] #43092: atlas: Atlas could not detect any fortran compiler

[MacPorts]

#43092: atlas: Atlas could not detect any fortran compiler
--------------------------+---------------------
  Reporter:  gbacareza@…  |      Owner:  vince@…
      Type:  defect       |     Status:  new
  Priority:  Normal       |  Milestone:
 Component:  ports        |    Version:  2.2.1
Resolution:               |   Keywords:
      Port:  atlas        |
--------------------------+---------------------

Comment (by jad11@…):

 Replying to [comment:3 ryandesign@…]:
 > The log is fairly straightforward; the error message it contains
 describes what you have to do:
 >
 > > Atlas could not detect any fortran compiler. If you really don’t need
 the fortran interface to be built, please use the +nofortran option, else
 install a fortran compiler (e.g. gcc4X) before building Atlas.

 At risk of hijacking the ticket, but in the hope that my experiences will
 assist in solving the problem, I wanted to report that I am also having
 similar problems with the atlas install.  Having read your advice, I have
 made several further attempts with and without gcc48 but without success.
 In my most recent attempt, I started from a brand new macports
 installation, and performed just:
 {{{
 sudo port selfupdate
 sudo port upgrade outdated
 sudo port install gcc48
 sudo port install atlas +gcc48
 }}}
 The terminal output for the final command is:
 {{{
 jad11:~$ sudo port install atlas +gcc48
 Password:
 --->  Computing dependencies for atlas
 --->  Fetching archive for atlas
 --->  Attempting to fetch atlas-3.10.1_5+gcc48.darwin_13.x86_64.tbz2 from
 http://packages.macports.org/atlas
 --->  Attempting to fetch atlas-3.10.1_5+gcc48.darwin_13.x86_64.tbz2 from
 http://lil.fr.packages.macports.org/atlas
 --->  Attempting to fetch atlas-3.10.1_5+gcc48.darwin_13.x86_64.tbz2 from
 http://nue.de.packages.macports.org/macports/packages/atlas
 --->  Fetching distfiles for atlas
 --->  Attempting to fetch atlas3.10.1.tar.bz2 from
 http://aarnet.dl.sourceforge.net/project/math-atlas/Stable/3.10.1
 --->  Attempting to fetch lapack-3.4.2.tgz from
 http://www.netlib.org/lapack
 --->  Verifying checksums for atlas
 --->  Extracting atlas
 --->  Applying patches to atlas
 --->  Configuring atlas
 Selected C compiler: /opt/local/bin/gcc-mp-4.8
 Selected F77 compiler: gfortran48
 Warning: GCC compilers on MacOS do not support AVX: downgrading.
 Error: org.macports.configure for port atlas returned: configure failure:
 command execution failed
 Please see the log file for port atlas for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port atlas failed
 }}}
 The pertinent section from the atlas install log would appear to be:
 {{{
 :info:configure
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//CONFIG/include/atlconf.h:4:19:
 fatal error: stdio.h: No such file or directory
 :info:configure  #include <stdio.h>
 :info:configure                    ^
 :info:configure compilation terminated.
 :info:configure make: *** [atlconf_misc.o] Error 1
 :info:configure ./xconfig -d s
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/../
 -d b
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build
 -Si lapackref 1 -O 12 -v 5 -D c -DATL_DYLIBS -A 26 -V 448 -Si omp 0 -C acg
 /opt/local/bin/gcc-mp-4.8 -A 25 -F acg '-fomit-frame-pointer -mfpmath=sse
 -O3 -fno-schedule-insns2 -fPIC -msse4.2' -C if /opt/local/bin/gfortran-
 mp-4.8 -F if '-fomit-frame-pointer -mfpmath=sse -O3 -fno-schedule-insns2
 -fPIC -msse4.2' -Ss f77lib /opt/local/lib/gcc48/libgfortran.dylib -b 64 -D
 c -DPentiumCPS=2800
 :info:configure /bin/sh: line 1: ./xconfig: No such file or directory
 :info:configure xconfig exited with 127
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"
 && ../configure --prefix=/opt/local --with-netlib-lapack-
 tarfile=/opt/local/var/macports/distfiles/atlas/lapack-3.4.2.tgz -O 12 -v
 5 --dylibs -A 26 -V 448 -Si omp 0 -C acg /opt/local/bin/gcc-mp-4.8 -A 25
 -F acg '-fomit-frame-pointer -mfpmath=sse -O3 -fno-schedule-insns2 -fPIC
 -msse4.2' -C if /opt/local/bin/gfortran-mp-4.8 -F if '-fomit-frame-pointer
 -mfpmath=sse -O3 -fno-schedule-insns2 -fPIC -msse4.2' -Ss f77lib
 /opt/local/lib/gcc48/libgfortran.dylib -b 64 -D c -DPentiumCPS=2800
 :info:configure Exit code: 127
 :error:configure org.macports.configure for port atlas returned: configure
 failure: command execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
     while executing
 "$procedure $targetname"
 :info:configure Warning: targets not executed for atlas:
 org.macports.activate org.macports.configure org.macports.build
 org.macports.destroot org.macports.install
 :notice:configure Please see the log file for port atlas for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
 }}}
 Thanks for your help
 Andy

-- 
Ticket URL: <https://trac.macports.org/ticket/43092#comment:4>
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