[MacPorts] #43080: New port for SeqAn applications

[MacPorts]

#43080: New port for SeqAn applications
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  Reporter:  tre@…       |      Owner:  macports-tickets@…
      Type:  submission  |     Status:  new
  Priority:  Normal      |  Milestone:
 Component:  ports       |    Version:  2.2.1
Resolution:              |   Keywords:
      Port:  seqan-apps  |
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Comment (by david.weese@…):

 Do you mistake OpenMP with OpenMPI? For multi-core parallelization in the
 SeqAn apps we need OpenMP which is a C++ language extension supported by
 the gcc compilers but not clang yet.

 SeqAn's apps very well compile with almost any compiler and on any
 platform but with clang they cannot benefit from multi-threading which is
 a performance problem when processing biological mass data. A second issue
 is the coinor-LEMON library I made a portfile for (#43101). LEMON does not
 compile with clang, only with gcc and we have one app (breakpoint-
 calculator) depending on LEMON.

 What is the problem to have port depending on gcc47 during installation?
 We didn't encounter any problems with gcc4x neither on Mac OS 10.8 nor
 10.9 yet.

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Ticket URL: <https://trac.macports.org/ticket/43080#comment:11>
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