[MacPorts] #43802: Pymol stopped working

[MacPorts]

#43802: Pymol stopped working
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 Reporter:  matteo.tiberti@…  |      Owner:  macports-tickets@…
     Type:  defect            |     Status:  new
 Priority:  High              |  Milestone:
Component:  ports             |    Version:  2.2.1
 Keywords:  pymol             |       Port:  pymol
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 Hello,
 I'm trying to use PyMOL  1.6.0 on Mac OSX
 Mavericks, installed through MacPorts, but the same happens with pymol
 1.7.1 as well (see ticket #42860).
 Up to a couple of days ago everything was working perfectly fine. At a
 certain point I have probably upgraded the installed base (selfupdate +
 upgrade outdated), and now when I run pymol I get an error (log file
 attached) and then PyMOL crashes.

 I have then tried the following:

 - reinstalled PyMOL 1.6.0
 - removed PyMOL 1.6.0 and installed 1.7.1
 - updated the XQuartz X server to the latest version
 - reinstalled the XQuartz X server to an older version
 - wiped MacPorts clean and reinstalled PyMOL and its prerequisites from
 scratch
 - installed the gfxCardStatus program and tried both using the integrated
 gpu and the discrete one
 - searched on the internet (of course :) )

 I have then asked for assistance in the PyMOL mailing list, and Thomas
 Holder, a PyMOL developer from Schrodinger, confirmed
 that he was experiencing the same. It looks like the issue only happens
 when PyMOL is built in the macports environment, and it's not related to
 any recent changes to PyMOL. This means that most likely something in
 macports got broken in the meanwhile.

 Thanks for your attention

-- 
Ticket URL: <https://trac.macports.org/ticket/43802>
MacPorts <http://www.macports.org/>
Ports system for OS X