[MacPorts] #43802: Pymol stopped working

[MacPorts]

#43802: Pymol stopped working
-------------------------------+-----------------------
  Reporter:  matteo.tiberti@…  |      Owner:  howarth@…
      Type:  defect            |     Status:  new
  Priority:  Normal            |  Milestone:
 Component:  ports             |    Version:  2.2.1
Resolution:                    |   Keywords:
      Port:  pymol             |
-------------------------------+-----------------------

Comment (by howarth.at.macports@…):

 Okay, removing the previous /Application/MacPorts python subdirectories, I
 am able to complete…

 sudo port -d install pymol

 but he resulting python crashes as…

 {{{
 Process:         Python [3965]
 Path:
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
 Identifier:      Python
 Version:         ??? (???)
 Code Type:       X86-64 (Native)
 Parent Process:  tcsh [3779]

 Date/Time:       2014-05-24 15:34:35.289 -0400
 OS Version:      Mac OS X 10.7.5 (11G63)
 Report Version:  9

 Interval Since Last Report:          5070847 sec
 Crashes Since Last Report:           2146
 Per-App Crashes Since Last Report:   8
 Anonymous UUID:                      C628C6CC-8DD8-4CC4-94C4-B6BD1EF9DE51

 Crashed Thread:  0  Dispatch queue: com.apple.main-thread

 Exception Type:  EXC_CRASH (SIGABRT)
 Exception Codes: 0x0000000000000000, 0x0000000000000000

 Application Specific Information:
 abort() called
 objc[3965]: garbage collection is OFF

 Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
 0   libsystem_kernel.dylib              0x00007fff96b60ce2 __pthread_kill
 + 10
 1   libsystem_c.dylib                   0x00007fff944de7d2 pthread_kill +
 95
 2   libsystem_c.dylib                   0x00007fff944cfa7a abort + 143
 3   libGL.1.dylib                       0x00000001085d648a
 apple_visual_create_pfobj + 935
 4   libGL.1.dylib                       0x00000001085d3ece
 apple_glx_create_context + 190
 5   libGL.1.dylib                       0x00000001085dcdf3
 applegl_create_context + 163
 6   libGL.1.dylib                       0x00000001085d88df CreateContext +
 123
 7   libGL.1.dylib                       0x00000001085d9a69
 glXCreateNewContext + 40
 8   libglut.3.dylib                     0x000000010872025f
 fghCreateNewContext + 310
 9   libglut.3.dylib                     0x000000010871ff58 fgOpenWindow +
 896
 10  libglut.3.dylib                     0x000000010871eaa3 fgCreateWindow
 + 356
 11  libglut.3.dylib                     0x000000010872045a
 glutCreateWindow + 118
 12  _cmd.so                             0x0000000107eaad1c main_common +
 940
 13  _cmd.so                             0x0000000107eaafcc main_shared +
 108
 14  _cmd.so                             0x0000000107e9ff47 CmdRunPyMOL +
 87
 15  org.python.python                   0x0000000107786b17
 PyEval_EvalFrameEx + 9911
 16  org.python.python                   0x0000000107784416
 PyEval_EvalCodeEx + 1990
 ….
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/43802#comment:3>
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