[MacPorts] #43802: Pymol stopped working

MacPorts noreply at macports.org
Sat May 24 16:41:58 PDT 2014


#43802: Pymol stopped working
-------------------------------+-----------------------
  Reporter:  matteo.tiberti@…  |      Owner:  howarth@…
      Type:  defect            |     Status:  new
  Priority:  Normal            |  Milestone:
 Component:  ports             |    Version:  2.2.1
Resolution:                    |   Keywords:
      Port:  pymol             |
-------------------------------+-----------------------

Comment (by howarth.at.macports@…):

 {{{
 (lldb) c
 Process 15099 resuming
 1 location added to breakpoint 1
 Process 15099 stopped
 * thread #1: tid = 0x1f03, 0x00000001006de00f
 libGL.1.dylib`apple_visual_create_pfobj, stop reason = breakpoint 1.1
     frame #0: 0x00000001006de00f libGL.1.dylib`apple_visual_create_pfobj
 libGL.1.dylib`apple_visual_create_pfobj:
 -> 0x1006de00f:  pushq  %rbp
    0x1006de010:  movq   %rsp, %rbp
    0x1006de013:  pushq  %r15
    0x1006de015:  pushq  %r14
 (lldb) disassemble --frame
 libGL.1.dylib`apple_visual_create_pfobj:
 -> 0x1006de00f:  pushq  %rbp
    0x1006de010:  movq   %rsp, %rbp
    0x1006de013:  pushq  %r15
    0x1006de015:  pushq  %r14
    0x1006de017:  pushq  %r13
    0x1006de019:  pushq  %r12
    0x1006de01b:  pushq  %rbx
    0x1006de01c:  subq   $280, %rsp
    0x1006de023:  movl   %r8d, %r12d
    0x1006de026:  movq   %rcx, -312(%rbp)
    0x1006de02d:  movq   %rdx, -304(%rbp)
    0x1006de034:  movq   %rsi, %r13
    0x1006de037:  movq   %rdi, %r14
    0x1006de03a:  movq   335839(%rip), %rax        ; (void
 *)0x00007fff7ddf4f60: __stack_chk_guard
    0x1006de041:  movq   (%rax), %rax
    0x1006de044:  movq   %rax, -48(%rbp)
    0x1006de048:  movl   $0, -292(%rbp)
    0x1006de052:  movl   $99, -288(%rbp)
    0x1006de05c:  movl   $12800, -284(%rbp)
    0x1006de066:  movl   $0, -280(%rbp)
    0x1006de070:  leaq   -288(%rbp), %rdi
    0x1006de077:  leaq   -292(%rbp), %rdx
    0x1006de07e:  leaq   386331(%rip), %rbx        ; apple_cgl
    0x1006de085:  movq   %r14, %rsi
    0x1006de088:  callq  *16(%rbx)
    0x1006de08b:  movl   %eax, %r15d
    0x1006de08e:  movq   %r14, %rdi
    0x1006de091:  callq  *24(%rbx)
    0x1006de094:  cmpl   $10000, %r15d
    0x1006de09b:  setne  %al
    0x1006de09e:  movzbl %al, %ebx
    0x1006de0a1:  addl   %ebx, %ebx
    0x1006de0a3:  testb  %r12b, %r12b
    0x1006de0a6:  je     0x1006de0fd               ;
 apple_visual_create_pfobj + 238
    0x1006de0a8:  leaq   207700(%rip), %rsi        ; "apple_visual.c"
    0x1006de0af:  leaq   207708(%rip), %rdx        ;
 "apple_visual_create_pfobj"
    0x1006de0b6:  leaq   207727(%rip), %r8         ; "offscreen rendering
 enabled.  Using kCGLPFAOffScreen\n"
    0x1006de0bd:  movl   $7, %edi
    0x1006de0c2:  movl   $99, %ecx
    0x1006de0c7:  xorb   %al, %al
    0x1006de0c9:  callq  0x1006dd0d0               ; _apple_glx_log
    0x1006de0ce:  movl   $53, -288(%rbp,%rbx,4)
    0x1006de0d9:  orl    $1, %ebx
    0x1006de0dc:  movl   $8, -288(%rbp,%rbx,4)
    0x1006de0e7:  leal   1(%rbx), %eax
    0x1006de0ea:  movl   $32, -288(%rbp,%rax,4)
    0x1006de0f5:  addl   $2, %ebx
    0x1006de0f8:  jmpq   0x1006de198               ;
 apple_visual_create_pfobj + 393
    0x1006de0fd:  leaq   207710(%rip), %rdi        ;
 "LIBGL_ALWAYS_SOFTWARE"
    0x1006de104:  callq  0x10070fa26               ; symbol stub for:
 getenv
    0x1006de109:  testq  %rax, %rax
    0x1006de10c:  je     0x1006de151               ;
 apple_visual_create_pfobj + 322
    0x1006de10e:  leaq   207598(%rip), %rsi        ; "apple_visual.c"
    0x1006de115:  leaq   207606(%rip), %rdx        ;
 "apple_visual_create_pfobj"
    0x1006de11c:  leaq   207701(%rip), %r8         ; "Software rendering
 requested.  Using kCGLRendererGenericFloatID.\n"
    0x1006de123:  movl   $7, %edi
    0x1006de128:  movl   $107, %ecx
    0x1006de12d:  xorb   %al, %al
    0x1006de12f:  callq  0x1006dd0d0               ; _apple_glx_log
    0x1006de134:  movl   $70, -288(%rbp,%rbx,4)
    0x1006de13f:  orl    $1, %ebx
    0x1006de142:  movl   $132096, -288(%rbp,%rbx,4)
    0x1006de14d:  incl   %ebx
    0x1006de14f:  jmp    0x1006de198               ;
 apple_visual_create_pfobj + 393
    0x1006de151:  leaq   207714(%rip), %rdi        ; "LIBGL_ALLOW_SOFTWARE"
    0x1006de158:  callq  0x10070fa26               ; symbol stub for:
 getenv
    0x1006de15d:  testq  %rax, %rax
    0x1006de160:  je     0x1006de18a               ;
 apple_visual_create_pfobj + 379
    0x1006de162:  leaq   207514(%rip), %rsi        ; "apple_visual.c"
    0x1006de169:  leaq   207522(%rip), %rdx        ;
 "apple_visual_create_pfobj"
    0x1006de170:  leaq   207704(%rip), %r8         ; "Software rendering is
 not being excluded.  Not using kCGLPFAAccelerated.\n"
    0x1006de177:  movl   $7, %edi
    0x1006de17c:  movl   $113, %ecx
    0x1006de181:  xorb   %al, %al
    0x1006de183:  callq  0x1006dd0d0               ; _apple_glx_log
    0x1006de188:  jmp    0x1006de198               ;
 apple_visual_create_pfobj + 393
    0x1006de18a:  movl   $73, -288(%rbp,%rbx,4)
    0x1006de195:  orl    $1, %ebx
    0x1006de198:  movslq %ebx, %rcx
    0x1006de19b:  movl   $74, -288(%rbp,%rcx,4)
    0x1006de1a6:  incl   %ecx
    0x1006de1a8:  xorb   %al, %al
    0x1006de1aa:  cmpl   $0, 16(%r13)
    0x1006de1af:  je     0x1006de1c8               ;
 apple_visual_create_pfobj + 441
    0x1006de1b1:  movslq %ecx, %rcx
    0x1006de1b4:  movl   $6, -288(%rbp,%rcx,4)
    0x1006de1bf:  addl   $2, %ebx
    0x1006de1c2:  movb   $1, %dl
    0x1006de1c4:  movl   %ebx, %ecx
    0x1006de1c6:  jmp    0x1006de1ca               ;
 apple_visual_create_pfobj + 443
    0x1006de1c8:  xorb   %dl, %dl
    0x1006de1ca:  movq   -312(%rbp), %rsi
    0x1006de1d1:  movb   %dl, (%rsi)
    0x1006de1d3:  testb  %r12b, %r12b
    0x1006de1d6:  jne    0x1006de1f1               ;
 apple_visual_create_pfobj + 482
    0x1006de1d8:  cmpl   $0, 12(%r13)
    0x1006de1dd:  je     0x1006de1f1               ;
 apple_visual_create_pfobj + 482
    0x1006de1df:  movslq %ecx, %rcx
    0x1006de1e2:  movl   $5, -288(%rbp,%rcx,4)
    0x1006de1ed:  incl   %ecx
    0x1006de1ef:  movb   $1, %al
    0x1006de1f1:  movq   -304(%rbp), %rdx
    0x1006de1f8:  movb   %al, (%rdx)
    0x1006de1fa:  movslq %ecx, %rdx
    0x1006de1fd:  movl   $8, -288(%rbp,%rdx,4)
    0x1006de208:  movl   24(%r13), %eax
    0x1006de20c:  addl   20(%r13), %eax
    0x1006de210:  addl   28(%r13), %eax
    0x1006de214:  leal   1(%rdx), %esi
    0x1006de217:  movslq %esi, %rsi
    0x1006de21a:  movl   %eax, -288(%rbp,%rsi,4)
    0x1006de221:  leal   2(%rdx), %eax
    0x1006de224:  movslq %eax, %rax
    0x1006de227:  movl   $11, -288(%rbp,%rax,4)
    0x1006de232:  leal   4(%rdx), %eax
    0x1006de235:  addl   $3, %edx
    0x1006de238:  movslq %edx, %rdx
    0x1006de23b:  movl   32(%r13), %esi
    0x1006de23f:  movl   %esi, -288(%rbp,%rdx,4)
    0x1006de246:  movl   64(%r13), %edx
    0x1006de24a:  addl   60(%r13), %edx
    0x1006de24e:  addl   68(%r13), %edx
    0x1006de252:  testl  %edx, %edx
    0x1006de254:  jle    0x1006de27a               ;
 apple_visual_create_pfobj + 619
    0x1006de256:  movslq %eax, %rax
    0x1006de259:  movl   $14, -288(%rbp,%rax,4)
    0x1006de264:  addl   72(%r13), %edx
    0x1006de268:  leal   5(%rcx), %eax
    0x1006de26b:  movslq %eax, %rax
    0x1006de26e:  movl   %edx, -288(%rbp,%rax,4)
    0x1006de275:  addl   $6, %ecx
    0x1006de278:  movl   %ecx, %eax
    0x1006de27a:  movl   76(%r13), %ecx
    0x1006de27e:  testl  %ecx, %ecx
    0x1006de280:  jle    0x1006de2a0               ;
 apple_visual_create_pfobj + 657
    0x1006de282:  movslq %eax, %rax
    0x1006de285:  movl   $12, -288(%rbp,%rax,4)
    0x1006de290:  leal   1(%rax), %edx
    0x1006de293:  movslq %edx, %rdx
    0x1006de296:  movl   %ecx, -288(%rbp,%rdx,4)
    0x1006de29d:  addl   $2, %eax
    0x1006de2a0:  movl   80(%r13), %ecx
    0x1006de2a4:  testl  %ecx, %ecx
    0x1006de2a6:  jle    0x1006de2c6               ;
 apple_visual_create_pfobj + 695
    0x1006de2a8:  movslq %eax, %rax
    0x1006de2ab:  movl   $13, -288(%rbp,%rax,4)
    0x1006de2b6:  leal   1(%rax), %edx
    0x1006de2b9:  movslq %edx, %rdx
    0x1006de2bc:  movl   %ecx, -288(%rbp,%rdx,4)
    0x1006de2c3:  addl   $2, %eax
    0x1006de2c6:  movl   132(%r13), %ecx
    0x1006de2cd:  testl  %ecx, %ecx
    0x1006de2cf:  jle    0x1006de325               ;
 apple_visual_create_pfobj + 790
    0x1006de2d1:  movslq %eax, %rax
    0x1006de2d4:  movl   $59, -288(%rbp,%rax,4)
    0x1006de2df:  leal   1(%rax), %edx
    0x1006de2e2:  movslq %edx, %rdx
    0x1006de2e5:  movl   $55, -288(%rbp,%rdx,4)
    0x1006de2f0:  leal   2(%rax), %edx
    0x1006de2f3:  movslq %edx, %rdx
    0x1006de2f6:  movl   %ecx, -288(%rbp,%rdx,4)
    0x1006de2fd:  leal   3(%rax), %ecx
    0x1006de300:  movslq %ecx, %rcx
    0x1006de303:  movl   $56, -288(%rbp,%rcx,4)
    0x1006de30e:  leal   4(%rax), %ecx
    0x1006de311:  movslq %ecx, %rcx
    0x1006de314:  movl   136(%r13), %edx
    0x1006de31b:  movl   %edx, -288(%rbp,%rcx,4)
    0x1006de322:  addl   $5, %eax
    0x1006de325:  leaq   385652(%rip), %rbx        ; apple_cgl
    0x1006de32c:  movslq %eax, %rax
    0x1006de32f:  movl   $0, -288(%rbp,%rax,4)
    0x1006de33a:  incl   %eax
    0x1006de33c:  cmpl   $60, %eax
    0x1006de33f:  jge    0x1006de385               ;
 apple_visual_create_pfobj + 886
    0x1006de341:  leaq   -288(%rbp), %rdi
    0x1006de348:  leaq   -292(%rbp), %rdx
    0x1006de34f:  movq   %r14, %rsi
    0x1006de352:  callq  *16(%rbx)
    0x1006de355:  testl  %eax, %eax
    0x1006de357:  jne    0x1006de3a4               ;
 apple_visual_create_pfobj + 917
    0x1006de359:  cmpq   $0, (%r14)
    0x1006de35d:  je     0x1006de3d2               ;
 apple_visual_create_pfobj + 963
    0x1006de35f:  movq   335034(%rip), %rax        ; (void
 *)0x00007fff7ddf4f60: __stack_chk_guard
    0x1006de366:  movq   (%rax), %rax
    0x1006de369:  cmpq   -48(%rbp), %rax
    0x1006de36d:  jne    0x1006de40d               ;
 apple_visual_create_pfobj + 1022
    0x1006de373:  addq   $280, %rsp
    0x1006de37a:  popq   %rbx
    0x1006de37b:  popq   %r12
    0x1006de37d:  popq   %r13
    0x1006de37f:  popq   %r14
    0x1006de381:  popq   %r15
    0x1006de383:  popq   %rbp
    0x1006de384:  ret
    0x1006de385:  leaq   206982(%rip), %rdi        ;
 "apple_visual_create_pfobj"
    0x1006de38c:  leaq   206960(%rip), %rsi        ; "apple_visual.c"
    0x1006de393:  leaq   207231(%rip), %rcx        ; "numattr < MAX_ATTR"
    0x1006de39a:  movl   $173, %edx
    0x1006de39f:  callq  0x10070f99c               ; symbol stub for:
 __assert_rtn
    0x1006de3a4:  movl   %eax, %edi
    0x1006de3a6:  callq  *80(%rbx)
    0x1006de3a9:  leaq   385760(%rip), %rbx        ;
 __crashreporter_info_buff__
    0x1006de3b0:  leaq   207221(%rip), %r8         ; "CGLChoosePixelFormat
 error: %s\n"
    0x1006de3b7:  movq   %rbx, %rdi
    0x1006de3ba:  movl   $4096, %esi
    0x1006de3bf:  xorl   %edx, %edx
    0x1006de3c1:  movl   $4096, %ecx
    0x1006de3c6:  movq   %rax, %r9
    0x1006de3c9:  xorb   %al, %al
    0x1006de3cb:  callq  0x10070f9a8               ; symbol stub for:
 __snprintf_chk
    0x1006de3d0:  jmp    0x1006de3f6               ;
 apple_visual_create_pfobj + 999
    0x1006de3d2:  leaq   385719(%rip), %rbx        ;
 __crashreporter_info_buff__
    0x1006de3d9:  leaq   207212(%rip), %r8         ; "No matching
 pixelformats found, perhaps try using LIBGL_ALLOW_SOFTWARE\n"
    0x1006de3e0:  movq   %rbx, %rdi
    0x1006de3e3:  movl   $4096, %esi
    0x1006de3e8:  xorl   %edx, %edx
    0x1006de3ea:  movl   $4096, %ecx
    0x1006de3ef:  xorb   %al, %al
    0x1006de3f1:  callq  0x10070f9a8               ; symbol stub for:
 __snprintf_chk
    0x1006de3f6:  movq   334891(%rip), %rax        ; (void
 *)0x00007fff7ddef630: __stderrp
    0x1006de3fd:  movq   (%rax), %rsi
    0x1006de400:  movq   %rbx, %rdi
    0x1006de403:  callq  0x10070fa14               ; symbol stub for: fputs
    0x1006de408:  callq  0x10070f9ba               ; symbol stub for: abort
    0x1006de40d:  callq  0x10070f9b4               ; symbol stub for:
 __stack_chk_fail
 (lldb)

 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/43802#comment:30>
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