[MacPorts] #45728: SuiteSparse @4.2.1_3+atlas: Undefined symbols _dgemm_ _dgemv_ _dger_ _dlarf_ _dlarfb_ _dlarfg_ _dlarft_ _dnrm2_ _dpotrf_ _dsyrk_ _dtrsm_ _dtrsv_ _dznrm2_ _zgemm_ _zgemv_ _zherk_ _zlarf_ _zlarfb_ _zlarfg_ _zlarft_ _zpotrf_ _ztrsm_ _ztrsv_ (was: SuiteSparse +atlas install failed during install octave +atlas +gui)
MacPorts
noreply at macports.org
Sun Nov 2 01:54:43 PST 2014
#45728: SuiteSparse @4.2.1_3+atlas: Undefined symbols _dgemm_ _dgemv_ _dger_
_dlarf_ _dlarfb_ _dlarfg_ _dlarft_ _dnrm2_ _dpotrf_ _dsyrk_ _dtrsm_ _dtrsv_
_dznrm2_ _zgemm_ _zgemv_ _zherk_ _zlarf_ _zlarfb_ _zlarfg_ _zlarft_
_zpotrf_ _ztrsm_ _ztrsv_
--------------------------+--------------------------------
Reporter: aarakes@… | Owner: macports-tickets@…
Type: defect | Status: closed
Priority: Normal | Milestone:
Component: ports | Version: 2.3.2
Resolution: duplicate | Keywords:
Port: SuiteSparse |
--------------------------+--------------------------------
Changes (by ryandesign@…):
* status: new => closed
* cc: michaelld@… (added)
* resolution: => duplicate
* port: SuiteSparse 4.2.1 => SuiteSparse
Old description:
> OS 10.9.5
> Xcode 6.1
> Build version 6A1052d
>
> Here is where the error occurred from the log file.
>
> :info:destroot _cholmod_super_lsolve in cholmod_super_solve.o
> :info:destroot _cholmod_super_ltsolve in cholmod_super_solve.o
> :info:destroot "_ztrsv_", referenced from:
> :info:destroot _cholmod_l_super_lsolve in cholmod_l_super_solve.o
> :info:destroot _cholmod_l_super_ltsolve in cholmod_l_super_solve.o
> :info:destroot _cholmod_super_lsolve in cholmod_super_solve.o
> :info:destroot _cholmod_super_ltsolve in cholmod_super_solve.o
> :info:destroot ld: symbol(s) not found for architecture x86_64
> :info:destroot clang: error: linker command failed with exit code 1 (use
> -v to see invocation)
> :info:destroot Command failed: /usr/bin/clang++ -Wall -Os -arch x86_64
> -dynamiclib -Wl,-all_load -L/opt/local/lib -ltatlas
> ../../SuiteSparse_config/libsuitesparseconfig.4.2.1.dylib
> ../../AMD/Lib/libamd.2.4.0.dylib ../../CAMD/Lib/libcamd.2.4.0.dylib
> ../../COLAMD/Lib/libcolamd.2.9.0.dylib
> ../../CCOLAMD/Lib/libccolamd.2.9.0.dylib -o libcholmod.3.0.0.dylib
> -compatibility_version 3 -current_version 3.0.0 -install_name
> /opt/local/lib/libcholmod.3.0.0.dylib *.o
> :info:destroot Exit code: 1
> :error:destroot org.macports.destroot for port SuiteSparse returned:
> command execution failed
> :debug:destroot Error code: NONE
> :debug:destroot Backtrace: command execution failed
> while executing
> "proc-post-org.macports.destroot-destroot-0 org.macports.destroot"
> ("eval" body line 1)
> invoked from within
> "eval $post $targetname"
> :info:destroot Warning: targets not executed for SuiteSparse:
> org.macports.activate org.macports.destroot org.macports.install
> :error:destroot Failed to install SuiteSparse
> :debug:destroot Registry error: netpbm not registered as installed &
> active.
> invoked from within
> "registry_active $subport"
> invoked from within
> "$workername eval registry_active \$subport"
> :notice:destroot Please see the log file for port SuiteSparse for
> details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_SuiteSparse/SuiteSparse/main.log
New description:
OS 10.9.5 [[br]]
Xcode 6.1 [[br]]
Build version 6A1052d
Here is where the error occurred from the log file.
{{{
:info:destroot _cholmod_super_lsolve in cholmod_super_solve.o
:info:destroot _cholmod_super_ltsolve in cholmod_super_solve.o
:info:destroot "_ztrsv_", referenced from:
:info:destroot _cholmod_l_super_lsolve in cholmod_l_super_solve.o
:info:destroot _cholmod_l_super_ltsolve in cholmod_l_super_solve.o
:info:destroot _cholmod_super_lsolve in cholmod_super_solve.o
:info:destroot _cholmod_super_ltsolve in cholmod_super_solve.o
:info:destroot ld: symbol(s) not found for architecture x86_64
:info:destroot clang: error: linker command failed with exit code 1 (use
-v to see invocation)
:info:destroot Command failed: /usr/bin/clang++ -Wall -Os -arch x86_64
-dynamiclib -Wl,-all_load -L/opt/local/lib -ltatlas
../../SuiteSparse_config/libsuitesparseconfig.4.2.1.dylib
../../AMD/Lib/libamd.2.4.0.dylib ../../CAMD/Lib/libcamd.2.4.0.dylib
../../COLAMD/Lib/libcolamd.2.9.0.dylib
../../CCOLAMD/Lib/libccolamd.2.9.0.dylib -o libcholmod.3.0.0.dylib
-compatibility_version 3 -current_version 3.0.0 -install_name
/opt/local/lib/libcholmod.3.0.0.dylib *.o
:info:destroot Exit code: 1
:error:destroot org.macports.destroot for port SuiteSparse returned:
command execution failed
:debug:destroot Error code: NONE
:debug:destroot Backtrace: command execution failed
while executing
"proc-post-org.macports.destroot-destroot-0 org.macports.destroot"
("eval" body line 1)
invoked from within
"eval $post $targetname"
:info:destroot Warning: targets not executed for SuiteSparse:
org.macports.activate org.macports.destroot org.macports.install
:error:destroot Failed to install SuiteSparse
:debug:destroot Registry error: netpbm not registered as installed &
active.
invoked from within
"registry_active $subport"
invoked from within
"$workername eval registry_active \$subport"
:notice:destroot Please see the log file for port SuiteSparse for details:
/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_SuiteSparse/SuiteSparse/main.log
}}}
--
Comment:
Duplicate of #39072.
--
Ticket URL: <https://trac.macports.org/ticket/45728#comment:1>
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