[MacPorts] #45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h
MacPorts
noreply at macports.org
Sun Nov 16 18:59:23 PST 2014
#45911: py27-h5py @2.3.1_1 built against parallel HDF5 can't find mpi.h
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Reporter: willic3@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.3.2
Resolution: | Keywords:
Port: py27-h5py, openmpi-gcc48 |
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Changes (by ryandesign@…):
* cc: eborisch@…, sean@… (added)
* port: => py27-h5py, openmpi-gcc48
Old description:
> Hi,
>
> I am attempting to build py27-h5py on Yosemite. I have the following
> hdf5 installed: hdf5 @1.8.13_0+cxx+gcc48+openmpi+szip. The difficulty
> is that openmpi puts headers in the subdirectory /opt/local/include
> /openmpi-gcc48, so when I try to build py27-h5py I get:
>
> In file included from h5py/defs.c:241:
> In file included from h5py/api_compat.h:27:
> In file included from /opt/local/include/hdf5.h:24:
> /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found
> # include <mpi.h>
> ^
> 1 warning and 1 error generated.
>
> I would think the problem could be avoided by either defining CPPFLAGS
> appropriately or by using mpicc for compilation. My system info:
>
> OS X 10.10
> Xcode 6.1
> clang: Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn)
>
> Installed openmpi:
> openmpi-default @1.7.5_3+gcc48 (active)
> openmpi-gcc48 @1.7.5_3+fortran (active)
>
> Please let me know if you need any more info.
>
> Thanks,
> Charles
New description:
Hi,
I am attempting to build py27-h5py on Yosemite. I have the following hdf5
installed: `hdf5 @1.8.13_0+cxx+gcc48+openmpi+szip`. The difficulty is
that openmpi puts headers in the subdirectory /opt/local/include/openmpi-
gcc48, so when I try to build py27-h5py I get:
{{{
In file included from h5py/defs.c:241:
In file included from h5py/api_compat.h:27:
In file included from /opt/local/include/hdf5.h:24:
/opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found
# include <mpi.h>
^
1 warning and 1 error generated.
}}}
I would think the problem could be avoided by either defining CPPFLAGS
appropriately or by using mpicc for compilation. My system info:
OS X 10.10 [[br]]
Xcode 6.1 [[br]]
clang: `Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn)`
Installed openmpi:
{{{
openmpi-default @1.7.5_3+gcc48 (active)
openmpi-gcc48 @1.7.5_3+fortran (active)
}}}
Please let me know if you need any more info.
Thanks, [[br]]
Charles
--
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Ticket URL: <https://trac.macports.org/ticket/45911#comment:1>
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