[MacPorts] #35068: tophat and bowtie: update to 2+ (was: tophat: update to 2.0.4 and fix livecheck)

[MacPorts]

#35068: tophat and bowtie: update to 2+
----------------------------+------------------------------
  Reporter:  ryandesign@…   |      Owner:  haroldpimentel@…
      Type:  update         |     Status:  new
  Priority:  Normal         |  Milestone:
 Component:  ports          |    Version:
Resolution:                 |   Keywords:
      Port:  tophat bowtie  |
----------------------------+------------------------------
Changes (by khindenburg@…):

 * port:  tophat => tophat bowtie


Comment:

 bowtie also needs updated to 2.2.4; tophat 2+ says it should work with
 either bowtie version, but might as well do both.

 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

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Ticket URL: <https://trac.macports.org/ticket/35068#comment:3>
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