[MacPorts] #45401: Pymol destroot fails

[MacPorts]

#45401: Pymol destroot fails
-----------------------------+-----------------------
  Reporter:  josh.baraban@…  |      Owner:  howarth@…
      Type:  defect          |     Status:  new
  Priority:  Normal          |  Milestone:
 Component:  ports           |    Version:  2.3.1
Resolution:                  |   Keywords:
      Port:  pymol           |
-----------------------------+-----------------------
Changes (by ryandesign@…):

 * owner:  macports-tickets@… => howarth@…


Old description:

> The pymol destroot stage fails, apparently because it creates a file in
> the destroot directory and then attempts to copy over it.
>
> Error: org.macports.destroot for port pymol returned: error copying
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports"
> to
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/bin/pymol":
> file already exists
>
> I tried cleaning, and also deleting the offending file manually, but the
> destroot stage of the port, which I ran individually, creates it and then
> throws an error because of it.

New description:

 The pymol destroot stage fails, apparently because it creates a file in
 the destroot directory and then attempts to copy over it.

 {{{
 Error: org.macports.destroot for port pymol returned: error copying
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports"
 to
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/bin/pymol":
 file already exists
 }}}

 I tried cleaning, and also deleting the offending file manually, but the
 destroot stage of the port, which I ran individually, creates it and then
 throws an error because of it.

--

Comment:

 It looks like you're running trace mode? Does the problem go away if you
 don't use trace mode?

-- 
Ticket URL: <https://trac.macports.org/ticket/45401#comment:1>
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