[MacPorts] #45163: Prokka fails to build (some macports were used for the dependencies)
MacPorts
noreply at macports.org
Fri Sep 26 02:26:43 PDT 2014
#45163: Prokka fails to build (some macports were used for the dependencies)
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Reporter: hobbsilla@… | Owner: macports-tickets@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.3.1
Keywords: | Port:
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I attempted to build my prokka database and get this abort message. Could
someone help me figure out based on the provide output from my terminal
where I could find a more detailed log that I could attach to this ticket?
I used CPAN to install Bioperl. I believe cpanminus is in the macports but
I'm not sure if I managed to install CPAN from elsewhere. I have
ncbi_tools macports installed plus the blast+ through the source code just
to cover my bases. I install GNU Parallel through the Macports. All of the
other dependencies I installed from source code (HMMER, Aragorn, Prodigal
and Infernal). Any help would be greatly appreciated.
{{{
$ prokka --setupdb
Can't locate XML/Simple.pm in @INC (@INC contains:
/opt/local/lib/perl5/site_perl/5.12.5/darwin-thread-multi-2level
/opt/local/lib/perl5/site_perl/5.12.5
/opt/local/lib/perl5/vendor_perl/5.12.5/darwin-thread-multi-2level
/opt/local/lib/perl5/vendor_perl/5.12.5 /opt/local/lib/perl5/5.12.5
/darwin-thread-multi-2level /opt/local/lib/perl5/5.12.5
/opt/local/lib/perl5/site_perl /opt/local/lib/perl5/vendor_perl/5.12.4
/darwin-thread-multi-2level /opt/local/lib/perl5/vendor_perl/5.12.4
/opt/local/lib/perl5/vendor_perl .) at
/Users/elixir/Documents/Programming_Folder/bioinfo/prokka-1.10/bin/prokka
line 25.
}}}
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Ticket URL: <https://trac.macports.org/ticket/45163>
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