[MacPorts] #47461: Shogun installation failed

MacPorts noreply at macports.org
Thu Apr 16 01:40:57 PDT 2015 

#47461: Shogun installation failed
------------------------------+--------------------------------
  Reporter:  mariano.avino@…  |      Owner:  macports-tickets@…
      Type:  defect           |     Status:  closed
  Priority:  Normal           |  Milestone:
 Component:  ports            |    Version:  2.3.3
Resolution:  invalid          |   Keywords:
      Port:  shogun           |
------------------------------+--------------------------------

Comment (by mariano.avino@…):

 Thanks for the help.
 Sorry if I did not fill in the Port filed and Cc the port maintainers.
 I installed the Xcode command line tools and cleaned the port.
 I installed again MacPorts and then I ran these commands again:
 sudo port selfupdate

 sudo port install swig -php5 -ruby -perl +python +octave +r

 sudo port install shogun

 Unfortunately the process of installing shogun still fails.
 I got this log file now:

 version:1
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main pkgconfig 0.28_0 exists in the ports tree
 :debug:main pkgconfig 0.28_0  is the latest installed
 :debug:main pkgconfig 0.28_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/pkgconfig
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! pkgconfig 0.28_0 >= pkgconfig 0.28_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main libiconv 1.14_0 exists in the ports tree
 :debug:main libiconv 1.14_0  is the latest installed
 :debug:main libiconv 1.14_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
 :debug:main epoch: in tree: 2 installed: 2
 :debug:main gcc48 4.8.4_0 exists in the ports tree
 :debug:main gcc48 4.8.4_0  is the latest installed
 :debug:main gcc48 4.8.4_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc48
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup select 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed
 or it doesn't work
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! gcc48 4.8.4_0 >= gcc48 4.8.4_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main cctools 862_1 exists in the ports tree
 :debug:main cctools 862_1 +llvm35 is the latest installed
 :debug:main cctools 862_1 +llvm35 is active
 :debug:main Merging existing variants '+llvm35' into variants
 :debug:main new fully merged portvariants: llvm35 +
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Executing variant llvm35 provides llvm35
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! cctools 862_1 >= cctools 862_1
 :debug:main epoch: in tree: 1 installed: 1
 :debug:main llvm-3.5 3.5.1_3 exists in the ports tree
 :debug:main llvm-3.5 3.5.1_3  is the latest installed
 :debug:main llvm-3.5 3.5.1_3  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.5
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup select 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main compiler clang 600.0.57 not blacklisted because it doesn't
 match {clang < 425.0.24}
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! llvm-3.5 3.5.1_3 >= llvm-3.5 3.5.1_3
 :debug:main epoch: in tree: 20090923 installed: 20090923
 :debug:main libedit 20140620-3.1_0 exists in the ports tree
 :debug:main libedit 20140620-3.1_0  is the latest installed
 :debug:main libedit 20140620-3.1_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! libedit 20140620-3.1_0 >= libedit
 20140620-3.1_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main ncurses 5.9_2 exists in the ports tree
 :debug:main ncurses 5.9_2  is the latest installed
 :debug:main ncurses 5.9_2  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main libffi 3.2.1_0 exists in the ports tree
 :debug:main libffi 3.2.1_0  is the latest installed
 :debug:main libffi 3.2.1_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! libffi 3.2.1_0 >= libffi 3.2.1_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main zlib 1.2.8_0 exists in the ports tree
 :debug:main zlib 1.2.8_0  is the latest installed
 :debug:main zlib 1.2.8_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup xcodeversion 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
 :debug:main epoch: in tree: 1 installed: 1
 :debug:main libcxx 3.6.0_0 exists in the ports tree
 :debug:main libcxx 3.6.0_0  is the latest installed
 :debug:main libcxx 3.6.0_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/libcxx
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! libcxx 3.6.0_0 >= libcxx 3.6.0_0
 :debug:main Found Dependency: path: /usr/bin filename: perl regex: ^perl$
 :debug:main perl5 is *not* installed by MacPorts
 :debug:main Searching for dependency: perl5
 :debug:main Didn't find receipt, going to depspec regex for: perl5
 :debug:main Found Dependency: path: /usr/bin filename: perl regex: ^perl$
 :debug:main perl5 not installed, soft dependency satisfied
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main llvm_select 1.0_0 exists in the ports tree
 :debug:main llvm_select 1.0_0  is the latest installed
 :debug:main llvm_select 1.0_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup select 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
 :debug:main universal_variant is false, so not adding the default
 universal variant
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! llvm_select 1.0_0 >= llvm_select 1.0_0
 :debug:main epoch: in tree: 1 installed: 1
 :debug:main cloog 0.18.2_2 exists in the ports tree
 :debug:main cloog 0.18.2_2  is the latest installed
 :debug:main cloog 0.18.2_2  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cloog
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! cloog 0.18.2_2 >= cloog 0.18.2_2
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main gmp 6.0.0_1 exists in the ports tree
 :debug:main gmp 6.0.0_1  is the latest installed
 :debug:main gmp 6.0.0_1  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gmp
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! gmp 6.0.0_1 >= gmp 6.0.0_1
 :debug:main epoch: in tree: 2 installed: 2
 :debug:main isl 0.14_2 exists in the ports tree
 :debug:main isl 0.14_2  is the latest installed
 :debug:main isl 0.14_2  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/isl
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! isl 0.14_2 >= isl 0.14_2
 :debug:main epoch: in tree: 2 installed: 2
 :debug:main ld64 2_0 exists in the ports tree
 :debug:main ld64 2_0  is the latest installed
 :debug:main ld64 2_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! ld64 2_0 >= ld64 2_0
 :debug:main epoch: in tree: 2 installed: 2
 :debug:main ld64-latest 236.3_1 exists in the ports tree
 :debug:main ld64-latest 236.3_1 +llvm35 is the latest installed
 :debug:main ld64-latest 236.3_1 +llvm35 is active
 :debug:main Merging existing variants '+llvm35' into variants
 :debug:main new fully merged portvariants: llvm35 +
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main compiler clang 600.0.57 not blacklisted because it doesn't
 match {clang < 100}
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Executing variant llvm35 provides llvm35
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! ld64-latest 236.3_1 >= ld64-latest 236.3_1
 :debug:main epoch: in tree: 2 installed: 2
 :debug:main libgcc 4.9.2_1 exists in the ports tree
 :debug:main libgcc 4.9.2_1  is the latest installed
 :debug:main libgcc 4.9.2_1  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc49
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup select 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed
 or it doesn't work
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! libgcc 4.9.2_1 >= libgcc 4.9.2_1
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main libmpc 1.0.3_0 exists in the ports tree
 :debug:main libmpc 1.0.3_0  is the latest installed
 :debug:main libmpc 1.0.3_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libmpc
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! libmpc 1.0.3_0 >= libmpc 1.0.3_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main mpfr 3.1.2-p10_3 exists in the ports tree
 :debug:main mpfr 3.1.2-p10_3  is the latest installed
 :debug:main mpfr 3.1.2-p10_3  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/mpfr
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main compiler clang 600.0.57 not blacklisted because it doesn't
 match {clang == 211.10.1}
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! mpfr 3.1.2-p10_3 >= mpfr 3.1.2-p10_3
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main gcc_select 0.1_8 exists in the ports tree
 :debug:main gcc_select 0.1_8  is the latest installed
 :debug:main gcc_select 0.1_8  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/gcc_select
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup select 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
 :debug:main universal_variant is false, so not adding the default
 universal variant
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! gcc_select 0.1_8 >= gcc_select 0.1_8
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main hdf5 1.8.14_0 exists in the ports tree
 :debug:main hdf5 1.8.14_0 +cxx is the latest installed
 :debug:main hdf5 1.8.14_0 +cxx is active
 :debug:main Merging existing variants '+cxx' into variants
 :debug:main new fully merged portvariants: cxx +
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup conflicts_build 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main Sourcing PortGroup active_variants 1.1 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
 :debug:main Sourcing PortGroup compilers 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
 :debug:main Sourcing PortGroup mpi 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Executing variant cxx provides cxx
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! hdf5 1.8.14_0 >= hdf5 1.8.14_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main json-c 0.12-20140410_0 exists in the ports tree
 :debug:main json-c 0.12-20140410_0  is the latest installed
 :debug:main json-c 0.12-20140410_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/json-c
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup github 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! json-c 0.12-20140410_0 >= json-c
 0.12-20140410_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main libxml2 2.9.2_2 exists in the ports tree
 :debug:main libxml2 2.9.2_2  is the latest installed
 :debug:main libxml2 2.9.2_2  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! libxml2 2.9.2_2 >= libxml2 2.9.2_2
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main xz 5.2.1_0 exists in the ports tree
 :debug:main xz 5.2.1_0  is the latest installed
 :debug:main xz 5.2.1_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! xz 5.2.1_0 >= xz 5.2.1_0
 :debug:main epoch: in tree: 2 installed: 2
 :debug:main gettext 0.19.4_0 exists in the ports tree
 :debug:main gettext 0.19.4_0  is the latest installed
 :debug:main gettext 0.19.4_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main compiler clang 600.0.57 not blacklisted because it doesn't
 match {clang < 211.10.1}
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! gettext 0.19.4_0 >= gettext 0.19.4_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main expat 2.1.0_0 exists in the ports tree
 :debug:main expat 2.1.0_0  is the latest installed
 :debug:main expat 2.1.0_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main readline 6.3.003_0 exists in the ports tree
 :debug:main readline 6.3.003_0  is the latest installed
 :debug:main readline 6.3.003_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/readline
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! readline 6.3.003_0 >= readline 6.3.003_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main atlas 3.10.2_1 exists in the ports tree
 :debug:main atlas 3.10.2_1 +gcc48 is the latest installed
 :debug:main atlas 3.10.2_1 +gcc48 is active
 :debug:main Merging existing variants '+gcc48' into variants
 :debug:main new fully merged portvariants: gcc48 +
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/atlas
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Executing variant gcc48 provides gcc48
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Chosen compiler macports-gcc-4.8 is provided by a port, adding
 dependency
 :debug:main Adding depends_lib port:gcc48
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! atlas 3.10.2_1 >= atlas 3.10.2_1
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main arpack 3.1.5_0 exists in the ports tree
 :debug:main arpack 3.1.5_0 +accelerate+gfortran is the latest installed
 :debug:main arpack 3.1.5_0 +accelerate+gfortran is active
 :debug:main Merging existing variants '+accelerate+gfortran' into variants
 :debug:main new fully merged portvariants: accelerate + gfortran +
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/arpack
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main Sourcing PortGroup active_variants 1.1 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
 :debug:main Sourcing PortGroup compilers 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
 :debug:main Sourcing PortGroup mpi 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Executing variant gfortran provides gfortran
 :debug:main Executing variant accelerate provides accelerate
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! arpack 3.1.5_0 >= arpack 3.1.5_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main eigen3 3.2.4_0 exists in the ports tree
 :debug:main eigen3 3.2.4_0  is the latest installed
 :debug:main eigen3 3.2.4_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/eigen3
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup active_variants 1.1 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
 :debug:main Sourcing PortGroup compilers 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
 :debug:main Re-registering default for configure.dir
 :debug:main Re-registering default for build.dir
 :debug:main Sourcing PortGroup cmake 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/cmake-1.0.tcl
 :debug:main only one arch supported, so not adding the default universal
 variant
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! eigen3 3.2.4_0 >= eigen3 3.2.4_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main lp_solve 5.5.2.0_0 exists in the ports tree
 :debug:main lp_solve 5.5.2.0_0  is the latest installed
 :debug:main lp_solve 5.5.2.0_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/lp_solve
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! lp_solve 5.5.2.0_0 >= lp_solve 5.5.2.0_0
 :debug:main epoch: in tree: 1 installed: 1
 :debug:main glpk 4.48_0 exists in the ports tree
 :debug:main glpk 4.48_0  is the latest installed
 :debug:main glpk 4.48_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/glpk
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Sourcing PortGroup archcheck 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! glpk 4.48_0 >= glpk 4.48_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main lzo2 2.09_0 exists in the ports tree
 :debug:main lzo2 2.09_0  is the latest installed
 :debug:main lzo2 2.09_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/lzo2
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Sourcing PortGroup muniversal 1.0 from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! lzo2 2.09_0 >= lzo2 2.09_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main snappy 1.1.1_0 exists in the ports tree
 :debug:main snappy 1.1.1_0  is the latest installed
 :debug:main snappy 1.1.1_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/snappy
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! snappy 1.1.1_0 >= snappy 1.1.1_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main gzip 1.6_0 exists in the ports tree
 :debug:main gzip 1.6_0  is the latest installed
 :debug:main gzip 1.6_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/gzip
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main adding the default universal variant
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! gzip 1.6_0 >= gzip 1.6_0
 :debug:main epoch: in tree: 0 installed: 0
 :debug:main bzip2 1.0.6_0 exists in the ports tree
 :debug:main bzip2 1.0.6_0  is the latest installed
 :debug:main bzip2 1.0.6_0  is active
 :debug:main Merging existing variants '' into variants
 :debug:main new fully merged portvariants:
 :debug:main Changing to port directory:
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
 :debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
 :debug:main Reading variant descriptions from
 /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
 :debug:main universal variant already exists, so not adding the default
 one
 :debug:main Running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Finished running callback
 portconfigure::add_automatic_compiler_dependencies
 :debug:main Running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main Finished running callback
 portbuild::add_automatic_buildsystem_dependencies
 :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
 :msg:main --->  Computing dependencies for shogun:info:main .:debug:main
 Checking for conflicts against shogun
 :debug:main Searching for dependency: shogun-devel
 :debug:main Didn't find receipt, going to depspec regex for: shogun-devel
 :debug:main Searching for dependency: pkgconfig
 :debug:main Found Dependency: receipt exists for pkgconfig
 :debug:main Searching for dependency: gcc48
 :debug:main Found Dependency: receipt exists for gcc48
 :debug:main Searching for dependency: hdf5
 :debug:main Found Dependency: receipt exists for hdf5
 :debug:main Searching for dependency: json-c
 :debug:main Found Dependency: receipt exists for json-c
 :debug:main Searching for dependency: libxml2
 :debug:main Found Dependency: receipt exists for libxml2
 :debug:main Searching for dependency: readline
 :debug:main Found Dependency: receipt exists for readline
 :debug:main Searching for dependency: atlas
 :debug:main Found Dependency: receipt exists for atlas
 :debug:main Searching for dependency: arpack
 :debug:main Found Dependency: receipt exists for arpack
 :debug:main Searching for dependency: eigen3
 :debug:main Found Dependency: receipt exists for eigen3
 :debug:main Searching for dependency: lp_solve
 :debug:main Found Dependency: receipt exists for lp_solve
 :debug:main Searching for dependency: glpk
 :debug:main Found Dependency: receipt exists for glpk
 :debug:main Searching for dependency: lzo2
 :debug:main Found Dependency: receipt exists for lzo2
 :debug:main Searching for dependency: snappy
 :debug:main Found Dependency: receipt exists for snappy
 :debug:main Searching for dependency: gzip
 :debug:main Found Dependency: receipt exists for gzip
 :debug:main Searching for dependency: bzip2
 :debug:main Found Dependency: receipt exists for bzip2
 :debug:main Searching for dependency: xz
 :debug:main Found Dependency: receipt exists for xz
 :debug:main Searching for dependency: libgcc
 :debug:main Found Dependency: receipt exists for libgcc
 :msg:main
 :debug:main Executing org.macports.main (shogun)
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 502
 :debug:main Skipping completed org.macports.archivefetch (shogun)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (shogun)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (shogun)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (shogun)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (shogun)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:configure configure phase started at Thu Apr 16 10:32:06 CEST 2015
 :notice:configure --->  Configuring shogun
 :debug:configure Using compiler 'Xcode Clang'
 :debug:configure Executing org.macports.configure (shogun)
 :debug:configure Environment:
 CC='/usr/bin/clang'
 CC_PRINT_OPTIONS='YES'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/.CC_PRINT_OPTIONS'
 CFLAGS='-pipe -Os -arch x86_64'
 CPATH='/opt/local/include'
 CPPFLAGS='-I/opt/local/include'
 CXX='/usr/bin/clang++'
 CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
 F77='/opt/local/bin/gfortran-mp-4.8'
 F77FLAGS='-m64'
 F90='/opt/local/bin/gfortran-mp-4.8'
 F90FLAGS='-pipe -Os -m64'
 FC='/opt/local/bin/gfortran-mp-4.8'
 FCFLAGS='-pipe -Os -m64'
 FFLAGS='-pipe -Os'
 INSTALL='/usr/bin/install -c'
 LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64'
 LIBRARY_PATH='/opt/local/lib'
 MACOSX_DEPLOYMENT_TARGET='10.9'
 OBJC='/usr/bin/clang'
 OBJCFLAGS='-pipe -Os -arch x86_64'
 OBJCXX='/usr/bin/clang++'
 OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
 POSTLINKFLAGS='-L/opt/local/lib/gcc47'
 :debug:configure Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src"
 && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5
 --enable-json --enable-xml --enable-readline --enable-largefile --disable-
 spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-
 superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve
 --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2
 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light
 --disable-logcache --enable-shortrealkernelcache --enable-logsum-array
 --disable-hmm-parallel --disable-doxygen --enable-optimization
 --includes=/opt/local/include --libs=/opt/local/lib
 --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot
 --interfaces=cmdline_static --enable-cpudetection'
 :debug:configure Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src"
 && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5
 --enable-json --enable-xml --enable-readline --enable-largefile --disable-
 spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-
 superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve
 --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2
 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light
 --disable-logcache --enable-shortrealkernelcache --enable-logsum-array
 --disable-hmm-parallel --disable-doxygen --enable-optimization
 --includes=/opt/local/include --libs=/opt/local/lib
 --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot
 --interfaces=cmdline_static --enable-cpudetection
 :info:configure Running configure for SHOGUN version 2.1.0
 :info:configure Checking for C Compiler ...
 :info:configure Error: no C compiler detected - cannot do anything
 :info:configure
 :info:configure Check configure.log if you do not understand why it
 failed.
 :info:configure The last 20 lines of configure.log are shown below
 :info:configure
 :info:configure
 :info:configure int main(void) { return 0; }
 :info:configure
 :info:configure cc  -I/opt/local/include   -pipe -Os -arch x86_64
 ./configure-18576-954.c -o ./configure-29380-954.o -L/opt/local/lib
 -lgfortran   -L/opt/local/lib/gcc47
 :info:configure ld: warning: directory not found for option
 '-L/opt/local/lib/gcc47'
 :info:configure ld: warning: directory not found for option
 '-LLD_LIBRARY_PATH'
 :info:configure ld: library not found for -lgfortran
 :info:configure clang: error: linker command failed with exit code 1 (use
 -v to see invocation)
 :info:configure no object file created
 :info:configure
 :info:configure
 :info:configure int main(void) { return 0; }
 :info:configure
 :info:configure gcc  -I/opt/local/include   -pipe -Os -arch x86_64
 ./configure-18576-954.c -o ./configure-29380-954.o -L/opt/local/lib
 -lgfortran   -L/opt/local/lib/gcc47
 :info:configure ld: warning: directory not found for option
 '-L/opt/local/lib/gcc47'
 :info:configure ld: warning: directory not found for option
 '-LLD_LIBRARY_PATH'
 :info:configure ld: library not found for -lgfortran
 :info:configure clang: error: linker command failed with exit code 1 (use
 -v to see invocation)
 :info:configure no object file created
 :info:configure
 :info:configure Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/shogun-2.1.0/src"
 && ./configure --prefix=/opt/local --ldflags=-lgfortran --enable-hdf5
 --enable-json --enable-xml --enable-readline --enable-largefile --disable-
 spinlocks --enable-lapack --enable-arpack --disable-mosek --disable-
 superlu --disable-nlopt --enable-eigen3 --disable-cplex --enable-lpsolve
 --enable-glpk --enable-lzo --enable-snappy --enable-gzip --enable-bzip2
 --enable-lzma --enable-bigstates --enable-hmmcache --enable-svm-light
 --disable-logcache --enable-shortrealkernelcache --enable-logsum-array
 --disable-hmm-parallel --disable-doxygen --enable-optimization
 --includes=/opt/local/include --libs=/opt/local/lib
 --destdir=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/work/destroot
 --interfaces=cmdline_static --enable-cpudetection
 :info:configure Exit code: 1
 :error:configure org.macports.configure for port shogun returned:
 configure failure: command execution failed
 :debug:configure Error code: NONE
 :debug:configure Backtrace: configure failure: command execution failed
     while executing
 "portconfigure::configure_main org.macports.configure"
     ("eval" body line 1)
     invoked from within
 "eval $procedure $targetname"
 :info:configure Warning: targets not executed for shogun:
 org.macports.activate org.macports.configure org.macports.build
 org.macports.destroot org.macports.install
 :notice:configure Please see the log file for port shogun for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_shogun/shogun/main.log

 Thanks a lot again.
 Cheers,
 Mariano

-- 
Ticket URL: <https://trac.macports.org/ticket/47461#comment:4>
MacPorts <https://www.macports.org/>
Ports system for OS X

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