[MacPorts] #47474: Processing of port py-h5py failed

MacPorts noreply at macports.org
Thu Apr 16 11:37:09 PDT 2015 

#47474: Processing of port py-h5py failed
----------------------+------------------------
  Reporter:  fm@…     |      Owner:  eborisch@…
      Type:  defect   |     Status:  new
  Priority:  Normal   |  Milestone:
 Component:  ports    |    Version:  2.3.3
Resolution:           |   Keywords:
      Port:  py-h5py  |
----------------------+------------------------
Description changed by mf2k@…:

Old description:

> I am trying to install h5py.
> I have previously installed hdf5 with macports
> I have: hdf5 @1.8.14_0+cxx (active)
>
> Below I append the full main.log file. This is the log+error message I
> get:
>
> > sudo port install py-h5py
> --->  Computing dependencies for py-h5py
> --->  Dependencies to be installed: py27-h5py
> --->  Building py27-h5py
> Error: org.macports.build for port py27-h5py returned: command execution
> failed
> Error: Failed to install py27-h5py
> Please see the log file for port py27-h5py for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
> .org_release_tarballs_ports_python_py-h5py/py27-h5py/main.log
> Error: The following dependencies were not installed: py27-h5py
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port py-h5py failed
>
> ------------------------
> main.log:
>
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
> .org_release_tarballs_ports_python_py-h5py/py27-h5py/main.log
> ------------------------
>
> version:1
> :debug:main changing euid/egid - current euid: 0 - current egid: 0
> :debug:main egid changed to: 501
> :debug:main euid changed to: 502
> :debug:main Executing org.macports.main (py27-h5py)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.archivefetch (py27-h5py)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.fetch (py27-h5py)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.checksum (py27-h5py)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.extract (py27-h5py)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.patch (py27-h5py)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:main Skipping completed org.macports.configure (py27-h5py)
> :debug:main Privilege de-escalation not attempted as not running as root.
> :debug:build build phase started at Thu Apr 16 17:26:10 CEST 2015
> :notice:build --->  Building py27-h5py
> :debug:build Executing proc-pre-org.macports.build-build-0
> :debug:build Executing org.macports.build (py27-h5py)
> :debug:build Environment:
> CC='/usr/bin/clang'
> CC_PRINT_OPTIONS='YES'
> CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
> .org_release_tarballs_ports_python_py-
> h5py/py27-h5py/work/.CC_PRINT_OPTIONS'
> CFLAGS='-arch x86_64'
> CPATH='/opt/local/include'
> CXX='/usr/bin/clang++'
> CXXFLAGS='-arch x86_64'
> F90FLAGS='-m64'
> FCFLAGS='-m64'
> FFLAGS='-m64'
> LDFLAGS='-arch x86_64'
> LIBRARY_PATH='/opt/local/lib'
> MACOSX_DEPLOYMENT_TARGET='10.10'
> OBJC='/usr/bin/clang'
> OBJCFLAGS='-arch x86_64'
> :debug:build Assembled command: 'cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
> .org_release_tarballs_ports_python_py-h5py/py27-h5py/work/h5py-2.5.0" &&
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
> setup.py --no-user-cfg build'
> :debug:build Executing command line:  cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
> .org_release_tarballs_ports_python_py-h5py/py27-h5py/work/h5py-2.5.0" &&
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
> setup.py --no-user-cfg build
> :info:build Download error on https://pypi.python.org/simple/six/: [SSL:
> CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:581) -- Some
> packages may not be found!
> :info:build Couldn't find index page for 'six' (maybe misspelled?)
> :info:build Download error on https://pypi.python.org/simple/: [SSL:
> CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:581) -- Some
> packages may not be found!
> :info:build No local packages or download links found for six
> :info:build Traceback (most recent call last):
> :info:build   File "setup.py", line 140, in <module>
> :info:build     cmdclass = CMDCLASS,
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py",
> line 111, in setup
> :info:build     _setup_distribution = dist = klass(attrs)
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/setuptools/dist.py", line 265, in __init__
> :info:build     self.fetch_build_eggs(attrs['setup_requires'])
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/setuptools/dist.py", line 310, in fetch_build_eggs
> :info:build     replace_conflicting=True,
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/pkg_resources/__init__.py", line 824, in resolve
> :info:build     dist = best[req.key] = env.best_match(req, ws, installer)
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/pkg_resources/__init__.py", line 1069, in best_match
> :info:build     return self.obtain(req, installer)
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/pkg_resources/__init__.py", line 1081, in obtain
> :info:build     return installer(requirement)
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/setuptools/dist.py", line 377, in fetch_build_egg
> :info:build     return cmd.easy_install(req)
> :info:build   File
> "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
> /site-packages/setuptools/command/easy_install.py", line 623, in
> easy_install
> :info:build     raise DistutilsError(msg)
> :info:build distutils.errors.DistutilsError: Could not find suitable
> distribution for Requirement.parse('six')
> :info:build Command failed:  cd
> "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
> .org_release_tarballs_ports_python_py-h5py/py27-h5py/work/h5py-2.5.0" &&
> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
> setup.py --no-user-cfg build
> :info:build Exit code: 1
> :error:build org.macports.build for port py27-h5py returned: command
> execution failed
> :debug:build Error code: CHILDSTATUS 48104 1
> :debug:build Backtrace: command execution failed
>     while executing
> "system -nice 0 $fullcmdstring"
>     ("eval" body line 1)
>     invoked from within
> "eval system $notty $nice \$fullcmdstring"
>     invoked from within
> "command_exec build"
>     (procedure "portbuild::build_main" line 8)
>     invoked from within
> "portbuild::build_main org.macports.build"
>     ("eval" body line 1)
>     invoked from within
> "eval $procedure $targetname"
> :info:build Warning: targets not executed for py27-h5py:
> org.macports.activate org.macports.build org.macports.destroot
> org.macports.install
> :error:build Failed to install py27-h5py
> :debug:build Registry error: py27-h5py not registered as installed &
> active.
>     invoked from within
> "registry_active $subport"
>     invoked from within
> "$workername eval registry_active \$subport"
> :notice:build Please see the log file for port py27-h5py for details:

New description:

 I am trying to install h5py.
 I have previously installed hdf5 with macports
 I have: hdf5 @1.8.14_0+cxx (active)

 Below I append the full main.log file. This is the log+error message I
 get:

 {{{
 > sudo port install py-h5py
 --->  Computing dependencies for py-h5py
 --->  Dependencies to be installed: py27-h5py
 --->  Building py27-h5py
 Error: org.macports.build for port py27-h5py returned: command execution
 failed
 Error: Failed to install py27-h5py
 Please see the log file for port py27-h5py for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_python_py-h5py/py27-h5py/main.log
 Error: The following dependencies were not installed: py27-h5py
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port py-h5py failed
 }}}
 ------------------------
 main.log:

 {{{
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_python_py-h5py/py27-h5py/main.log
 ------------------------

 version:1
 :debug:main changing euid/egid - current euid: 0 - current egid: 0
 :debug:main egid changed to: 501
 :debug:main euid changed to: 502
 :debug:main Executing org.macports.main (py27-h5py)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.archivefetch (py27-h5py)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.fetch (py27-h5py)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.checksum (py27-h5py)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.extract (py27-h5py)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.patch (py27-h5py)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:main Skipping completed org.macports.configure (py27-h5py)
 :debug:main Privilege de-escalation not attempted as not running as root.
 :debug:build build phase started at Thu Apr 16 17:26:10 CEST 2015
 :notice:build --->  Building py27-h5py
 :debug:build Executing proc-pre-org.macports.build-build-0
 :debug:build Executing org.macports.build (py27-h5py)
 :debug:build Environment:
 CC='/usr/bin/clang'
 CC_PRINT_OPTIONS='YES'
 CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_python_py-
 h5py/py27-h5py/work/.CC_PRINT_OPTIONS'
 CFLAGS='-arch x86_64'
 CPATH='/opt/local/include'
 CXX='/usr/bin/clang++'
 CXXFLAGS='-arch x86_64'
 F90FLAGS='-m64'
 FCFLAGS='-m64'
 FFLAGS='-m64'
 LDFLAGS='-arch x86_64'
 LIBRARY_PATH='/opt/local/lib'
 MACOSX_DEPLOYMENT_TARGET='10.10'
 OBJC='/usr/bin/clang'
 OBJCFLAGS='-arch x86_64'
 :debug:build Assembled command: 'cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_python_py-h5py/py27-h5py/work/h5py-2.5.0" &&
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
 setup.py --no-user-cfg build'
 :debug:build Executing command line:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_python_py-h5py/py27-h5py/work/h5py-2.5.0" &&
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
 setup.py --no-user-cfg build
 :info:build Download error on https://pypi.python.org/simple/six/: [SSL:
 CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:581) -- Some
 packages may not be found!
 :info:build Couldn't find index page for 'six' (maybe misspelled?)
 :info:build Download error on https://pypi.python.org/simple/: [SSL:
 CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:581) -- Some
 packages may not be found!
 :info:build No local packages or download links found for six
 :info:build Traceback (most recent call last):
 :info:build   File "setup.py", line 140, in <module>
 :info:build     cmdclass = CMDCLASS,
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py",
 line 111, in setup
 :info:build     _setup_distribution = dist = klass(attrs)
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/setuptools/dist.py", line 265, in __init__
 :info:build     self.fetch_build_eggs(attrs['setup_requires'])
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/setuptools/dist.py", line 310, in fetch_build_eggs
 :info:build     replace_conflicting=True,
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/pkg_resources/__init__.py", line 824, in resolve
 :info:build     dist = best[req.key] = env.best_match(req, ws, installer)
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/pkg_resources/__init__.py", line 1069, in best_match
 :info:build     return self.obtain(req, installer)
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/pkg_resources/__init__.py", line 1081, in obtain
 :info:build     return installer(requirement)
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/setuptools/dist.py", line 377, in fetch_build_egg
 :info:build     return cmd.easy_install(req)
 :info:build   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/setuptools/command/easy_install.py", line 623, in
 easy_install
 :info:build     raise DistutilsError(msg)
 :info:build distutils.errors.DistutilsError: Could not find suitable
 distribution for Requirement.parse('six')
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_python_py-h5py/py27-h5py/work/h5py-2.5.0" &&
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
 setup.py --no-user-cfg build
 :info:build Exit code: 1
 :error:build org.macports.build for port py27-h5py returned: command
 execution failed
 :debug:build Error code: CHILDSTATUS 48104 1
 :debug:build Backtrace: command execution failed
     while executing
 "system -nice 0 $fullcmdstring"
     ("eval" body line 1)
     invoked from within
 "eval system $notty $nice \$fullcmdstring"
     invoked from within
 "command_exec build"
     (procedure "portbuild::build_main" line 8)
     invoked from within
 "portbuild::build_main org.macports.build"
     ("eval" body line 1)
     invoked from within
 "eval $procedure $targetname"
 :info:build Warning: targets not executed for py27-h5py:
 org.macports.activate org.macports.build org.macports.destroot
 org.macports.install
 :error:build Failed to install py27-h5py
 :debug:build Registry error: py27-h5py not registered as installed &
 active.
     invoked from within
 "registry_active $subport"
     invoked from within
 "$workername eval registry_active \$subport"
 :notice:build Please see the log file for port py27-h5py for details:
 }}}

--

-- 
Ticket URL: <https://trac.macports.org/ticket/47474#comment:2>
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