[MacPorts] #47517: netcdf-fortran @4.4.2 +universal destroot failure

[MacPorts]

#47517: netcdf-fortran @4.4.2 +universal destroot failure
------------------------------+--------------------------------
 Reporter:  mark.chilenski@…  |      Owner:  macports-tickets@…
     Type:  defect            |     Status:  new
 Priority:  Normal            |  Milestone:
Component:  ports             |    Version:  2.3.3
 Keywords:                    |       Port:
------------------------------+--------------------------------
 When attempting to install netcdf-fortran under Yosemite 10.10.3, the
 following failure occurs:

 {{{
 $ sudo port install netcdf-fortran
 --->  Computing dependencies for netcdf-fortran
 --->  Fetching archive for netcdf-fortran
 --->  Attempting to fetch netcdf-
 fortran-4.4.2_0+gcc49+universal.darwin_14.i386-x86_64.tbz2 from
 http://mse.uk.packages.macports.org/sites/packages.macports.org/netcdf-
 fortran
 --->  Attempting to fetch netcdf-
 fortran-4.4.2_0+gcc49+universal.darwin_14.i386-x86_64.tbz2 from
 http://packages.macports.org/netcdf-fortran
 --->  Attempting to fetch netcdf-
 fortran-4.4.2_0+gcc49+universal.darwin_14.i386-x86_64.tbz2 from
 http://nue.de.packages.macports.org/macports/packages/netcdf-fortran
 --->  Fetching distfiles for netcdf-fortran
 --->  Verifying checksums for netcdf-fortran
 --->  Extracting netcdf-fortran
 --->  Configuring netcdf-fortran
 --->  Building netcdf-fortran
 --->  Staging netcdf-fortran into destroot
 Error: org.macports.destroot for port netcdf-fortran returned: command
 execution failed
 Please see the log file for port netcdf-fortran for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_science_netcdf-fortran/netcdf-fortran/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port netcdf-fortran failed
 }}}

 The log file is attached. The first error I can spot seems to be around
 line 1795 in the log. The portion around this block is as follows:

 {{{
 ...
 :info:destroot  /bin/sh ../libtool   --mode=install /usr/bin/install -c
 libnetcdff.la '/opt/local/lib'
 :info:destroot libtool: install: /usr/bin/install -c
 .libs/libnetcdff.6.dylib /opt/local/lib/libnetcdff.6.dylib
 :info:destroot install: /opt/local/lib/libnetcdff.6.dylib: Operation not
 permitted
 :info:destroot make[3]: *** [install-libLTLIBRARIES] Error 71
 :info:destroot make[3]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_science_netcdf-fortran/netcdf-fortran/work
 /netcdf-fortran-4.4.2-i386/fortran'
 :info:destroot make[2]: *** [install-am] Error 2
 :info:destroot make[2]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_science_netcdf-fortran/netcdf-fortran/work
 /netcdf-fortran-4.4.2-i386/fortran'
 :info:destroot make[1]: *** [install] Error 2
 :info:destroot make[1]: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_science_netcdf-fortran/netcdf-fortran/work
 /netcdf-fortran-4.4.2-i386/fortran'
 :info:destroot make: *** [install-recursive] Error 1
 :info:destroot make: Leaving directory
 `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_science_netcdf-fortran/netcdf-fortran/work
 /netcdf-fortran-4.4.2-i386'
 :info:destroot Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_science_netcdf-fortran/netcdf-fortran/work
 /netcdf-fortran-4.4.2-i386" && /usr/bin/make -w install
 {prefix=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_science_netcdf-fortran/netcdf-
 fortran/work/destroot-i386/opt/local {MANDIR=\${prefix}/share/man}}
 :info:destroot Exit code: 2
 ...
 }}}

 Wondering if the "Operation not permitted" was a symptom of insufficient
 privileges (despite having used "sudo"), I tried running as root directly
 (i.e., typing "sudo -i" first) and the same error occurred.

-- 
Ticket URL: <https://trac.macports.org/ticket/47517>
MacPorts <https://www.macports.org/>
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