[MacPorts] #48281: py27-pygrib @1.9.9: ld: library not found for -lopenjpeg (was: py27-pygrib @1.9.9 - Install failed: Processing of port py27-pygrib failed)
MacPorts
noreply at macports.org
Tue Jul 7 23:41:47 PDT 2015
#48281: py27-pygrib @1.9.9: ld: library not found for -lopenjpeg
------------------------------------+----------------------
Reporter: christopher.edwards@… | Owner: jswhit@…
Type: defect | Status: new
Priority: Normal | Milestone:
Component: ports | Version: 2.3.3
Resolution: | Keywords:
Port: py27-pygrib |
------------------------------------+----------------------
Changes (by ryandesign@…):
* keywords: pygrib =>
* owner: macports-tickets@… => jswhit@…
* port: => py27-pygrib
Old description:
> I have tried to install/build through Macports and src with no luck.
> Attached MACPORT Log.
>
> Building version 2.0.0 Output:
>
> python setup.py build
> reading from setup.cfg...running build
> running build_py
> running build_ext
> building 'pygrib' extension
> cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g
> -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE
> -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG
> -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64
> -arch i386 -pipe
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include
> -I/opt/local/include -I/opt/local/include -I/opt/local/include/jasper
> -I/opt/local/include -I/usr/include -I/usr/include -Ig2clib_src
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
> -c pygrib.c -o build/temp.macosx-10.9-intel-2.7/pygrib.o
> pygrib.c:12092:18: warning: assigning to 'char *' from 'const char *'
> discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
> __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
> ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> pygrib.c:12502:18: warning: assigning to 'char *' from 'const char *'
> discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
> __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
> ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> pygrib.c:16175:53: warning: passing 'void **' to parameter of type 'const
> void **' discards qualifiers in nested pointer types [-Wincompatible-
> pointer-types-discards-qualifiers]
> __pyx_v_err = grib_get_message(__pyx_v_self->_gh, (&__pyx_v_message),
> (&__pyx_v_size));
> ^~~~~~~~~~~~~~~~~~
> /opt/local/include/grib_api.h:562:51: note: passing argument to parameter
> 'message' here
> int grib_get_message(grib_handle* h ,const void** message, size_t
> *message_length );
> ^
> pygrib.c:35462:32: warning: unused function '__Pyx_PyUnicode_FromString'
> [-Wunused-function]
> static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*
> c_str) {
> ^
> pygrib.c:301:29: warning: unused function '__Pyx_Py_UNICODE_strlen'
> [-Wunused-function]
> static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
> ^
> pygrib.c:35577:33: warning: unused function '__Pyx_PyIndex_AsSsize_t'
> [-Wunused-function]
> static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
> ^
> pygrib.c:33784:28: warning: unused function
> '__Pyx_CyFunction_InitDefaults' [-Wunused-function]
> static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func,
> size_t size, int pyobjects) {
> ^
> pygrib.c:33793:27: warning: unused function
> '__Pyx_CyFunction_SetDefaultsTuple' [-Wunused-function]
> static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject
> *func, PyObject *tuple) {
> ^
> pygrib.c:33798:27: warning: unused function
> '__Pyx_CyFunction_SetDefaultsKwDict' [-Wunused-function]
> static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject
> *func, PyObject *dict) {
> ^
> pygrib.c:33803:27: warning: unused function
> '__Pyx_CyFunction_SetAnnotationsDict' [-Wunused-function]
> static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject
> *func, PyObject *dict) {
> ^
> pygrib.c:33901:27: warning: unused function '__Pyx_ErrFetch' [-Wunused-
> function]
> static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject
> **value, PyObject **tb) {
> ^
> pygrib.c:34412:32: warning: unused function '__Pyx_GetItemInt_List_Fast'
> [-Wunused-function]
> static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o,
> Py_ssize_t i,
> ^
> pygrib.c:34426:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast'
> [-Wunused-function]
> static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o,
> Py_ssize_t i,
> ^
> pygrib.c:34520:26: warning: unused function '__Pyx_PyUnicode_Equals'
> [-Wunused-function]
> static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject*
> s2, int equals) {
> ^
> pygrib.c:35241:26: warning: function '__Pyx_PyInt_As_int' is not needed
> and will not be emitted [-Wunneeded-internal-declaration]
> static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
> ^
> 15 warnings generated.
> pygrib.c:12092:18: warning: assigning to 'char *' from 'const char *'
> discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
> __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
> ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> pygrib.c:12502:18: warning: assigning to 'char *' from 'const char *'
> discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
> __pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
> ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> pygrib.c:16175:53: warning: passing 'void **' to parameter of type 'const
> void **' discards qualifiers in nested pointer types [-Wincompatible-
> pointer-types-discards-qualifiers]
> __pyx_v_err = grib_get_message(__pyx_v_self->_gh, (&__pyx_v_message),
> (&__pyx_v_size));
> ^~~~~~~~~~~~~~~~~~
> /opt/local/include/grib_api.h:562:51: note: passing argument to parameter
> 'message' here
> int grib_get_message(grib_handle* h ,const void** message, size_t
> *message_length );
> ^
> pygrib.c:35462:32: warning: unused function '__Pyx_PyUnicode_FromString'
> [-Wunused-function]
> static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*
> c_str) {
> ^
> pygrib.c:301:29: warning: unused function '__Pyx_Py_UNICODE_strlen'
> [-Wunused-function]
> static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
> ^
> pygrib.c:35577:33: warning: unused function '__Pyx_PyIndex_AsSsize_t'
> [-Wunused-function]
> static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
> ^
> pygrib.c:33784:28: warning: unused function
> '__Pyx_CyFunction_InitDefaults' [-Wunused-function]
> static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func,
> size_t size, int pyobjects) {
> ^
> pygrib.c:33793:27: warning: unused function
> '__Pyx_CyFunction_SetDefaultsTuple' [-Wunused-function]
> static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject
> *func, PyObject *tuple) {
> ^
> pygrib.c:33798:27: warning: unused function
> '__Pyx_CyFunction_SetDefaultsKwDict' [-Wunused-function]
> static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject
> *func, PyObject *dict) {
> ^
> pygrib.c:33803:27: warning: unused function
> '__Pyx_CyFunction_SetAnnotationsDict' [-Wunused-function]
> static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject
> *func, PyObject *dict) {
> ^
> pygrib.c:33901:27: warning: unused function '__Pyx_ErrFetch' [-Wunused-
> function]
> static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject
> **value, PyObject **tb) {
> ^
> pygrib.c:34412:32: warning: unused function '__Pyx_GetItemInt_List_Fast'
> [-Wunused-function]
> static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o,
> Py_ssize_t i,
> ^
> pygrib.c:34426:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast'
> [-Wunused-function]
> static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o,
> Py_ssize_t i,
> ^
> pygrib.c:34520:26: warning: unused function '__Pyx_PyUnicode_Equals'
> [-Wunused-function]
> static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject*
> s2, int equals) {
> ^
> pygrib.c:35241:26: warning: function '__Pyx_PyInt_As_int' is not needed
> and will not be emitted [-Wunneeded-internal-declaration]
> static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
> ^
> 15 warnings generated.
> cc -bundle -undefined dynamic_lookup -arch x86_64 -arch i386 -Wl,-F.
> build/temp.macosx-10.9-intel-2.7/pygrib.o -L/opt/local/lib
> -L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib
> -L/opt/local/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib -L/usr/lib64
> -L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64
> -L/opt/local/lib -L/opt/local/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib
> -L/usr/lib64 -lgrib_api -ljasper -lopenjpeg -lpng -lz -o
> build/lib.macosx-10.9-intel-2.7/pygrib.so
> ld: warning: directory not found for option '-L/opt/local/lib64'
> ld: warning: directory not found for option '-L/opt/local/lib64'
> ld: warning: directory not found for option '-L/opt/local/lib64'
> ld: warning: directory not found for option '-L/usr/lib64'
> ld: warning: directory not found for option '-L/usr/lib64'
> ld: warning: directory not found for option '-L/opt/local/lib64'
> ld: warning: directory not found for option '-L/opt/local/lib64'
> ld: warning: directory not found for option '-L/opt/local/lib64'
> ld: warning: directory not found for option '-L/usr/lib64'
> ld: warning: directory not found for option '-L/usr/lib64'
> ld: library not found for -lopenjpeg
> clang: error: linker command failed with exit code 1 (use -v to see
> invocation)
> error: command 'cc' failed with exit status 1
New description:
I have tried to install/build through Macports and src with no luck.
Attached MACPORT Log.
Building version 2.0.0 Output:
{{{
python setup.py build
reading from setup.cfg...running build
running build_py
running build_ext
building 'pygrib' extension
cc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -arch i386 -g
-Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE
-DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g
-fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch x86_64 -arch
i386 -pipe
-I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include
-I/opt/local/include -I/opt/local/include -I/opt/local/include/jasper
-I/opt/local/include -I/usr/include -I/usr/include -Ig2clib_src
-I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
-c pygrib.c -o build/temp.macosx-10.9-intel-2.7/pygrib.o
pygrib.c:12092:18: warning: assigning to 'char *' from 'const char *'
discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
__pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:12502:18: warning: assigning to 'char *' from 'const char *'
discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
__pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:16175:53: warning: passing 'void **' to parameter of type 'const
void **' discards qualifiers in nested pointer types [-Wincompatible-
pointer-types-discards-qualifiers]
__pyx_v_err = grib_get_message(__pyx_v_self->_gh, (&__pyx_v_message),
(&__pyx_v_size));
^~~~~~~~~~~~~~~~~~
/opt/local/include/grib_api.h:562:51: note: passing argument to parameter
'message' here
int grib_get_message(grib_handle* h ,const void** message, size_t
*message_length );
^
pygrib.c:35462:32: warning: unused function '__Pyx_PyUnicode_FromString'
[-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*
c_str) {
^
pygrib.c:301:29: warning: unused function '__Pyx_Py_UNICODE_strlen'
[-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
^
pygrib.c:35577:33: warning: unused function '__Pyx_PyIndex_AsSsize_t'
[-Wunused-function]
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
^
pygrib.c:33784:28: warning: unused function
'__Pyx_CyFunction_InitDefaults' [-Wunused-function]
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func,
size_t size, int pyobjects) {
^
pygrib.c:33793:27: warning: unused function
'__Pyx_CyFunction_SetDefaultsTuple' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject
*func, PyObject *tuple) {
^
pygrib.c:33798:27: warning: unused function
'__Pyx_CyFunction_SetDefaultsKwDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject
*func, PyObject *dict) {
^
pygrib.c:33803:27: warning: unused function
'__Pyx_CyFunction_SetAnnotationsDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject
*func, PyObject *dict) {
^
pygrib.c:33901:27: warning: unused function '__Pyx_ErrFetch' [-Wunused-
function]
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject
**value, PyObject **tb) {
^
pygrib.c:34412:32: warning: unused function '__Pyx_GetItemInt_List_Fast'
[-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o,
Py_ssize_t i,
^
pygrib.c:34426:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast'
[-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o,
Py_ssize_t i,
^
pygrib.c:34520:26: warning: unused function '__Pyx_PyUnicode_Equals'
[-Wunused-function]
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject*
s2, int equals) {
^
pygrib.c:35241:26: warning: function '__Pyx_PyInt_As_int' is not needed
and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
^
15 warnings generated.
pygrib.c:12092:18: warning: assigning to 'char *' from 'const char *'
discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
__pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:12502:18: warning: assigning to 'char *' from 'const char *'
discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
__pyx_v_name = grib_keys_iterator_get_name(__pyx_v_gi);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pygrib.c:16175:53: warning: passing 'void **' to parameter of type 'const
void **' discards qualifiers in nested pointer types [-Wincompatible-
pointer-types-discards-qualifiers]
__pyx_v_err = grib_get_message(__pyx_v_self->_gh, (&__pyx_v_message),
(&__pyx_v_size));
^~~~~~~~~~~~~~~~~~
/opt/local/include/grib_api.h:562:51: note: passing argument to parameter
'message' here
int grib_get_message(grib_handle* h ,const void** message, size_t
*message_length );
^
pygrib.c:35462:32: warning: unused function '__Pyx_PyUnicode_FromString'
[-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*
c_str) {
^
pygrib.c:301:29: warning: unused function '__Pyx_Py_UNICODE_strlen'
[-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
^
pygrib.c:35577:33: warning: unused function '__Pyx_PyIndex_AsSsize_t'
[-Wunused-function]
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
^
pygrib.c:33784:28: warning: unused function
'__Pyx_CyFunction_InitDefaults' [-Wunused-function]
static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func,
size_t size, int pyobjects) {
^
pygrib.c:33793:27: warning: unused function
'__Pyx_CyFunction_SetDefaultsTuple' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject
*func, PyObject *tuple) {
^
pygrib.c:33798:27: warning: unused function
'__Pyx_CyFunction_SetDefaultsKwDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject
*func, PyObject *dict) {
^
pygrib.c:33803:27: warning: unused function
'__Pyx_CyFunction_SetAnnotationsDict' [-Wunused-function]
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject
*func, PyObject *dict) {
^
pygrib.c:33901:27: warning: unused function '__Pyx_ErrFetch' [-Wunused-
function]
static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject
**value, PyObject **tb) {
^
pygrib.c:34412:32: warning: unused function '__Pyx_GetItemInt_List_Fast'
[-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o,
Py_ssize_t i,
^
pygrib.c:34426:32: warning: unused function '__Pyx_GetItemInt_Tuple_Fast'
[-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o,
Py_ssize_t i,
^
pygrib.c:34520:26: warning: unused function '__Pyx_PyUnicode_Equals'
[-Wunused-function]
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject*
s2, int equals) {
^
pygrib.c:35241:26: warning: function '__Pyx_PyInt_As_int' is not needed
and will not be emitted [-Wunneeded-internal-declaration]
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
^
15 warnings generated.
cc -bundle -undefined dynamic_lookup -arch x86_64 -arch i386 -Wl,-F.
build/temp.macosx-10.9-intel-2.7/pygrib.o -L/opt/local/lib
-L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib
-L/opt/local/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib -L/usr/lib64
-L/opt/local/lib -L/opt/local/lib64 -L/opt/local/lib -L/opt/local/lib64
-L/opt/local/lib -L/opt/local/lib64 -L/usr/lib -L/usr/lib64 -L/usr/lib
-L/usr/lib64 -lgrib_api -ljasper -lopenjpeg -lpng -lz -o
build/lib.macosx-10.9-intel-2.7/pygrib.so
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/opt/local/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: warning: directory not found for option '-L/usr/lib64'
ld: library not found for -lopenjpeg
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
error: command 'cc' failed with exit status 1
}}}
--
Comment:
Looks like maybe a dependency on port openjpeg15 is needed.
--
Ticket URL: <https://trac.macports.org/ticket/48281#comment:1>
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