[MacPorts] #47696: petsc @3.5.3_1+complex: configure fails (was: PETSc port doesn't compile with +complex)

MacPorts noreply at macports.org
Sun May 10 09:08:17 PDT 2015


#47696: petsc @3.5.3_1+complex: configure fails
--------------------------------+--------------------
  Reporter:  drososkourounis@…  |      Owner:  sean@…
      Type:  defect             |     Status:  new
  Priority:  Normal             |  Milestone:
 Component:  ports              |    Version:  2.3.3
Resolution:                     |   Keywords:
      Port:  petsc              |
--------------------------------+--------------------
Changes (by larryv@…):

 * keywords:  PETSc+complex =>
 * owner:  macports-tickets@… => sean@…
 * port:   => petsc


Old description:

> Dear developers,
> I tried to compile slepc-3.5.3 with FEAST support. Unfortunately it
> reports that FEAST is supported only with complex numbers.
> {{{
> :~/Work/Software/Optimization/FENICS/slepc-3.5.3$ ./configure
> --prefix=~/Work/Software/Optimization/FENICS/slepc-3.5.3/build --with-
> feast --with-feast-
> dir=~/Work/Software/Optimization/FENICS/FEAST/2.1/lib/osx --with-feast-
> flags='-lfeast_sparse -lfeast'
> Checking environment...
> Checking PETSc installation...
> ERROR: FEAST is supported only with complex numbers.
> ERROR: See "arch-darwin-c-opt/conf/configure.log" file for details
> }}}
>
> This happens because of the following:
>
> {{{
> $cat config/feast.py
> }}}
>

> {{{
> ..........................................................................
> def Check(conf,vars,cmake,tmpdir,directory,libs):
>
>   if petscconf.SCALAR != 'complex':
>     log.Exit('ERROR: FEAST is supported only with complex numbers.')
>
> }}}
>
> which means that PETSc needs to be compiled with +complex. I tried to
> compile PETSc this way and unfortunately no options succeeded.
>

> {{{
> sudo port install
> petsc at 3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex
> -mpich
> sudo port clean blabla
> sudo port uninstall blabla
> sudo port install
> petsc at 3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex
> sudo port install
> petsc at 3.5.3_1+accelerate+hypre+parmetis+suitesparse+complex
> }}}
>
> {{{
>
> ~/Work/Software/Optimization/FENICS/slepc-3.5.3$ sudo port install
> petsc at 3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex
> -mpich
> Password:
> --->  Computing dependencies for petsc
> --->  Fetching archive for petsc
> --->  Attempting to fetch
> petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2
> from http://nue.de.packages.macports.org/macports/packages/petsc
> --->  Attempting to fetch
> petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2
> from
> http://mse.uk.packages.macports.org/sites/packages.macports.org/petsc
> --->  Attempting to fetch
> petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2
> from http://lil.fr.packages.macports.org/petsc
> --->  Fetching distfiles for petsc
> --->  Verifying checksums for petsc
> --->  Extracting petsc
> --->  Applying patches to petsc
> --->  Configuring petsc
> Error: org.macports.configure for port petsc returned: configure failure:
> command execution failed
> Please see the log file for port petsc for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/petsc/main.log
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port petsc failed
>
> But anyone of the above without the +complex works. Below I attach the
> error log
> }}}

New description:

 Dear developers,\\
 I tried to compile slepc-3.5.3 with FEAST support. Unfortunately it
 reports that FEAST is supported only with complex numbers.
 {{{
 :~/Work/Software/Optimization/FENICS/slepc-3.5.3$ ./configure
 --prefix=~/Work/Software/Optimization/FENICS/slepc-3.5.3/build --with-
 feast --with-feast-
 dir=~/Work/Software/Optimization/FENICS/FEAST/2.1/lib/osx --with-feast-
 flags='-lfeast_sparse -lfeast'
 Checking environment...
 Checking PETSc installation...
 ERROR: FEAST is supported only with complex numbers.
 ERROR: See "arch-darwin-c-opt/conf/configure.log" file for details
 }}}

 This happens because of the following:

 {{{
 $cat config/feast.py
 }}}


 {{{
 ..........................................................................
 def Check(conf,vars,cmake,tmpdir,directory,libs):

   if petscconf.SCALAR != 'complex':
     log.Exit('ERROR: FEAST is supported only with complex numbers.')
 }}}

 which means that PETSc needs to be compiled with +complex. I tried to
 compile PETSc this way and unfortunately no options succeeded.

 {{{
 sudo port install
 petsc at 3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex -mpich
 sudo port clean blabla
 sudo port uninstall blabla
 sudo port install
 petsc at 3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex
 sudo port install
 petsc at 3.5.3_1+accelerate+hypre+parmetis+suitesparse+complex
 }}}

 {{{
 ~/Work/Software/Optimization/FENICS/slepc-3.5.3$ sudo port install
 petsc at 3.5.3_1+accelerate+hypre+openmpi+parmetis+suitesparse+complex -mpich
 Password:
 --->  Computing dependencies for petsc
 --->  Fetching archive for petsc
 --->  Attempting to fetch
 petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2
 from http://nue.de.packages.macports.org/macports/packages/petsc
 --->  Attempting to fetch
 petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2
 from http://mse.uk.packages.macports.org/sites/packages.macports.org/petsc
 --->  Attempting to fetch
 petsc-3.5.3_1+accelerate+complex+hypre+openmpi+parmetis+suitesparse.darwin_13.x86_64.tbz2
 from http://lil.fr.packages.macports.org/petsc
 --->  Fetching distfiles for petsc
 --->  Verifying checksums for petsc
 --->  Extracting petsc
 --->  Applying patches to petsc
 --->  Configuring petsc
 Error: org.macports.configure for port petsc returned: configure failure:
 command execution failed
 Please see the log file for port petsc for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_petsc/petsc/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port petsc failed
 }}}

 But anyone of the above without the +complex works. Below I attach the
 error log

--

Comment:

 Thanks for the report. In future tickets, please Cc any port maintainers
 (`port info --maintainers petsc`).

-- 
Ticket URL: <https://trac.macports.org/ticket/47696#comment:1>
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