[MacPorts] #49260: port selfupdate failed: Couldn't sync the ports tree: Synchronization of 1 source(s) failed

MacPorts noreply at macports.org
Tue Oct 13 10:00:43 PDT 2015 

#49260: port selfupdate failed: Couldn't sync the ports tree: Synchronization of 1
source(s) failed
-----------------------------+--------------------------------
 Reporter:  michaelwallis@…  |      Owner:  macports-tickets@…
     Type:  defect           |     Status:  new
 Priority:  Normal           |  Milestone:
Component:  ports            |    Version:  2.3.4
 Keywords:  self-update      |       Port:
-----------------------------+--------------------------------
 Not sure what changed, but I'm having trouble updating ports. I
 reinstalled the Yosemite MacPorts but I still get:

 $ sudo port -v selfupdate
 --->  Updating MacPorts base sources using rsync
 receiving file list ... done

 sent 36 bytes  received 30250 bytes  60572.00 bytes/sec
 total size is 25420143  speedup is 839.34
 MacPorts base version 2.3.4 installed,
 MacPorts base version 2.3.4 downloaded.
 --->  Updating the ports tree
 Synchronizing local ports tree from
 rsync://rsync.macports.org/release/ports/
 receiving file list ... rsync:
 readlink_stat("/ports/devel/libatomic_ops/Portfile" (in release)) failed:
 Input/output error (5)
 rsync: readlink_stat("/ports/devel/xxl/files/patch-configure.ac.diff" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/devel/crlibm/Portfile" (in release)) failed:
 Input/output error (5)
 rsync: readlink_stat("/ports/mail/sympa/files/httpd-sympa.conf" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/kde/kde-l10n-eu/files/patch-
 CMakeLists.txt.diff" (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/gadap/files/patch-gaBaseTypes.h.diff"
 (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/h5utils/files/patch-writepng.c" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/gqrx/Portfile" (in release)) failed:
 Input/output error (5)
 rsync: readlink_stat("/ports/science/libghemical/files/patch-
 autogen.sh.diff" (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/armadillo/Portfile" (in release))
 failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/viking/files/autogen.sh" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/ghemical/files/patch-autogen.sh.diff"
 (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/hdf5/files/yosemite-libtool.patch"
 (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/bedtools/Portfile" (in release))
 failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/swarm/files/patch-libpng-1.5.diff"
 (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/science/ldas-tools/files/patch-libraries-
 ldastoolsal-src-AtExit.cc.diff" (in release)) failed: Input/output error
 (5)
 rsync: readlink_stat("/ports/audio/sptk/Portfile" (in release)) failed:
 Input/output error (5)
 rsync: readlink_stat("/ports/textproc/unicode/Portfile" (in release))
 failed: Input/output error (5)
 rsync: readlink_stat("/ports/sysutils/augeas/files/yosemite-libtool.patch"
 (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/sysutils/libfaketime/Portfile" (in release))
 failed: Input/output error (5)
 rsync: readlink_stat("/ports/sysutils/sunwait/files/patch-main.c.diff" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/tex/blahtexml/files/patch-main.cpp.diff" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/ruby/rb-pcap/files/patch-Pcap.c.diff" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/ruby/rb-rjab-connection/files/patch-
 conn_connection.rb" (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/ruby/rb-tapkit/Portfile" (in release))
 failed: Input/output error (5)
 rsync: readlink_stat("/ports/ruby/rbenv/files/patch-libexec-rbenv-
 init.diff" (in release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/ruby/rb19-em-websocket/Portfile" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/ruby/rb19-activemodel/Portfile" (in release))
 failed: Input/output error (5)
 rsync: readlink_stat("/ports/aqua/qt4-mac-mysql55-plugin/Portfile" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/x11/fluxbox/files/patch-Makefile.in.diff" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/x11/xtide/files/patch-configure.ac.diff" (in
 release)) failed: Input/output error (5)
 rsync: readlink_stat("/ports/security/pbc/files/patch-configure.diff" (in
 release)) failed: Input/output error (5)
 done
 archivers/advancescan/Portfile
 archivers/arc/Portfile
 archivers/arj/Portfile
 archivers/arj/files/patch-uxspec.c
 archivers/bzip2/files/patch-Makefile-man.diff
 archivers/dact/Portfile
 archivers/dzip/Portfile
 archivers/dzip/files/patch-Makefile.linux.diff
 archivers/ecm/Portfile
 archivers/gzip/Portfile
 archivers/gzrecover/files/patch-Makefile
 archivers/libzzip/files/patch-zzip_Makefile.in.diff
 archivers/pigz/files/patch-Makefile.diff
 archivers/ppmd/Portfile
 archivers/sharutils/Portfile
 archivers/slimdata/Portfile
 archivers/star/files/patch-RULES__rules.prg.diff
 archivers/szip/Portfile
 archivers/zip/Portfile
 archivers/zlib/Portfile
 archivers/zoo/Portfile
 devel/CImg/Portfile
 devel/Drizzle/files/drizzle.in
 devel/MongoObjCDriver/Portfile
 devel/SilverCity/Portfile
 devel/aap/files/patch-python26.diff
 devel/apr-util0/Portfile
 devel/autoconf264/Portfile
 devel/bullet/Portfile
 devel/bzr-rewrite/Portfile
 devel/cableswig/Portfile
 devel/cableswig/files/no-windows-compilers.patch
 devel/cegui/Portfile
 devel/cegui/files/patch-cegui-include-CEGUIDynamicModule.h.diff
 devel/coccinelle/Portfile
 devel/curlhandle/files/patch-CURLFTPSession.m.diff
 devel/curlhandle/files/patch-CURLHandle.xcodeproj-project.pbxproj.diff
 devel/expect/Portfile
 devel/generatorrunner/Portfile
 devel/glade3/Portfile
 devel/glib2/Portfile
 devel/glib2/files/config.h.ed
 devel/glib2/files/patch-configure.diff
 devel/glib2/files/patch-glib_gunicollate.c.diff
 devel/gmp-cxx-wrappers/Portfile
 devel/gnats/Portfile
 devel/gnet2/Portfile
 devel/gtk-osx-application/Portfile
 devel/hs-bibutils/Portfile
 devel/hs-boolean/Portfile
 devel/hs-crypto/Portfile
 devel/hs-data-accessor-template/Portfile
 devel/hs-data-default-instances-containers/Portfile
 devel/hs-highlighting-kate/Portfile
 devel/hs-json/Portfile
 devel/hs-monads-fd/Portfile
 devel/hs-platform-async/Portfile
 devel/hs-platform-random/Portfile
 devel/hs-platform-split/Portfile
 devel/hs-platform-transformers/Portfile
 devel/hs-tf-random/Portfile
 devel/jam/Portfile
 devel/ld64/files/Makefile-127
 devel/ld64/files/ld64-127-cxx_initializer_order_and_sim.patch
 devel/libdaemon/Portfile
 devel/libgdiplus/files/patch-freetype-2.5.1.diff
 devel/libmongo-client/Portfile
 devel/libmowgli/files/patch-m4-buildsys.m4.diff
 devel/libnotify/Portfile
 devel/liboil/Portfile
 devel/liboil/files/automake.patch
 devel/libproplist/files/patch-config.guess
 devel/libproplist/files/patch-config.sub
 devel/libsdl/files/include_SDL_config.h.ed
 devel/libtool-devel/Portfile
 devel/libut/Portfile
 devel/libut/files/prf_shl.c.patch
 devel/magit/Portfile
 devel/maloc/Portfile
 devel/minipro/Portfile
 devel/ninka/Portfile
 devel/ninka/files/patch-ninka_pl.diff
 devel/nspr/files/nspr.pc
 devel/nuweb/Portfile
 devel/ocaml-menhir/Portfile
 devel/pick/Portfile
 devel/protobuf-c/Portfile
 devel/protobuf-cpp/Portfile
 devel/rcs/Portfile
 devel/tailor/Portfile
 devel/tclsqlite2/Portfile
 devel/tclsqlite2/files/Makefile
 devel/thieriot/Portfile
 devel/tig/Portfile
 devel/udis86/Portfile
 devel/util-linux/Portfile
 devel/valgrind/Portfile
 devel/xml-light/Portfile
 devel/zshdb/Portfile
 emulators/dosbox/files/3776.diff
 emulators/gelide/files/patch-autogen.sh.diff
 emulators/hatari/Portfile
 emulators/hercules/Portfile
 emulators/hercules/files/patch-hscutl.c.diff
 emulators/lisaem/Portfile
 emulators/minivmac-devel/files/README-binary-patchfiles.md
 emulators/minivmac-devel/files/readalias.applescript
 emulators/minivmac/files/README-binary-patchfiles.md
 emulators/nonpareil/files/patch-src-util.diff
 emulators/nonpareil/files/patch-src-voyager.diff
 emulators/qemu-usermode/Portfile
 emulators/qemu-usermode/files/patch-configure
 emulators/qemu-usermode/files/patch-q-i386
 emulators/qemu/Portfile
 emulators/qemu/files/patch-configure.diff
 emulators/xhyve/Portfile
 erlang/rebar/Portfile
 games/2Pong/Portfile
 games/2Pong/files/2Pong.in
 games/2Pong/files/patch-Makefile.diff
 games/2Pong/files/patch-defs.h.diff
 games/CrimsonFields/files/patch-cf-path.cpp.diff
 games/bluemoon/Portfile
 games/boswars/Portfile
 games/crack-attack/files/patch-glut-init.diff
 games/digger/files/patch-main.c.diff
 games/digger/files/patch-scores.c.diff
 games/duke3d/Portfile
 games/fife/Portfile
 games/fizmo/Portfile
 games/flobopuyo/Portfile
 games/flobopuyo/files/IosVector.cpp.patch
 games/flobopuyo/files/PuyoGame.cpp.patch
 games/gcs-java/Portfile
 games/gdash/files/patch-src-sdl-ogl.hpp.diff
 games/gtypist/Portfile
 games/gtypist/files/patch-src_Makefile.in-add-libiconv.diff
 games/lbreakout2/files/patch-gui-stk.c.diff
 games/mindless/Portfile
 games/openmortal/files/openmortal-0.7-gcc41.patch
 games/sdl_sopwith/Portfile
 games/ship84/files/patch-GNUmakefile.diff
 games/ship84/files/patch-shippy.c.diff
 games/supertuxkart/Portfile
 games/widelands/files/clang.patch
 kde/amarok/Portfile
 kde/amarok/files/patch-TrayIcon.diff
 kde/analitza/files/patch-plotter2d.diff
 kde/analitza/files/patch-plotter3d.diff
 kde/ark/Portfile
 kde/attica/Portfile
 kde/blinken/files/patch-CMakeLists.txt.diff
 kde/bomber/files/patch-CMakeLists.diff
 kde/bovo/Portfile
 kde/digikam/Portfile
 kde/dragon/Portfile
 kde/dragon/files/patch-CMakeLists.txt.diff
 kde/ffmpegthumbs/Portfile
 kde/granatier/Portfile
 kde/juk/Portfile
 kde/juk/files/patch-CMakeLists.txt.diff
 kde/kactivities/Portfile
 kde/kalzium/files/patch-CMakeLists.txt.diff
 kde/kamera/Portfile
 kde/kanagram/Portfile
 kde/kanagram/files/patch-CMakeLists.txt.diff
 kde/kapman/Portfile
 kde/kapman/files/patch-CMakeLists.diff
 kde/kate/Portfile
 kde/katomic/Portfile
 kde/katomic/files/patch-CMakeLists.diff
 kde/kblackbox/Portfile
 kde/kblackbox/files/patch-CMakeLists.diff
 kde/kblocks/files/patch-CMakeLists.diff
 kde/kbounce/Portfile
 kde/kbounce/files/patch-CMakeLists.diff
 kde/kbreakout/Portfile
 kde/kbreakout/files/patch-CMakeLists.diff
 kde/kbruch/Portfile
 kde/kbruch/files/patch-CMakeLists.txt.diff
 kde/kcolorchooser/files/patch-CMakeLists.diff
 kde/kde-extra-cmake-modules/files/patch-doc-building.diff
 kde/kde-l10n-ca/files/patch-CMakeLists.txt.diff
 kde/kde-l10n-cs/files/patch-CMakeLists.txt.diff
 kde/kde-l10n-el/files/patch-CMakeLists.txt.diff
 kde/kde-l10n-en_GB/files/patch-CMakeLists.txt.diff
 kde/kde-l10n-es/files/patch-CMakeLists.txt.diff
 kde/kde-l10n-fr/files/patch-CMakeLists.txt.diff
 kde/kde-l10n-uk/Portfile
 kde/kde-l10n-zh_CN/Portfile
 kde/kdepim4-runtime/files/patch-CMake-InfoPlist.diff
 kde/kdepim4/files/patch-blogger.diff
 kde/kdepim4/files/patch-emulate-addTitle.diff
 kde/kdepimlibs4/files/patch-CMakeLists-kioslaves.diff
 kde/kdepimlibs4/files/patch-CMakeLists.diff
 kde/kdiamond/Portfile
 kde/kfourinline/Portfile
 kde/kfourinline/files/patch-CMakeLists.diff
 kde/killbots/files/patch-CMakeLists.diff
 kde/kjumpingcube/Portfile
 kde/klickety/Portfile
 kde/klickety/files/patch-CMakeLists.diff
 kde/klines/files/patch-CMakeLists.diff
 kde/kmines/Portfile
 kde/kmines/files/patch-CMakeLists.diff
 kde/kmix/Portfile
 kde/kmix/files/patch-C11-headers.diff
 kde/kmix/files/patch-CMakeLists.txt.diff
 kde/knavalbattle/Portfile
 kde/knavalbattle/files/patch-CMakeLists.diff
 kde/kolf/Portfile
 kde/kolf/files/patch-CMakeLists.diff
 kde/kollision/files/patch-CMakeLists.diff
 kde/konquest/Portfile
 kde/konquest/files/patch-CMakeLists.diff
 kde/kpat/Portfile
 kde/kpat/files/patch-CMakeLists.diff
 kde/kreversi/Portfile
 kde/kreversi/files/patch-CMakeLists.diff
 kde/kscd/Portfile
 kde/kshisen/Portfile
 kde/kshisen/files/patch-CMakeLists.diff
 kde/ksirk/files/patch-CMakeLists.diff
 kde/ksnakeduel/Portfile
 kde/ksystemlog/files/patch-CMakeLists.diff
 kde/ktuberling/files/patch-CMakeLists.diff
 kde/kubrick/Portfile
 kde/libkcddb/Portfile
 kde/libkcompactdisc/Portfile
 kde/libkdegames/Portfile
 kde/libkmahjongg/Portfile
 kde/lskat/files/patch-CMakeLists.diff
 kde/mplayerthumbs/Portfile
 kde/nepomuk-core/files/patch-nepomuk-make-daemons-agents.diff
 kde/nepomuk-core/files/patch-nepomukctl.diff
 kde/nepomuk-widgets/Portfile
 kde/pairs/files/patch-Newiconfolder.diff
 kde/palapeli/Portfile
 kde/picmi/files/patch-CMakeLists.diff
 kde/py-pykde4/files/kubuntu_include_dirs.diff
 kde/py-pykde4/files/pythonpluginfactory_python3.diff
 kde/qtcurve/files/QtCurveOSX.colors
 kde/qtcurve/files/qtc_qtcurve-osx.themerc
 kde/qtcurve/files/qtc_qtcurve-rjvb.themerc
 mail/GNUMail-Aqua/Portfile
 mail/Pantomime-Framework/Portfile
 mail/Pantomime-Framework/files/Info-Pantomime__Upgraded_.plist
 mail/Pantomime-Framework/files/project.pbxproj
 mail/alpine/files/patch-configure.diff
 mail/altermime/Portfile
 mail/amavisd-new/Portfile
 mail/anubis/Portfile
 mail/assp/files/patch-assp.pl.diff
 mail/base-64/Portfile
 mail/bincimap/Portfile
 mail/bincimap/files/README.MACOSX.in
 mail/bincimap/files/patch-Makefile.in.diff
 mail/bincimap/files/patch-service.diff
 mail/bogofilter/Portfile
 mail/cclient/Portfile
 mail/claws-mail/Portfile
 mail/courier-imap/files/patch-rfc1035_res.h
 mail/cyrus-imapd/Portfile
 mail/cyrus-imapd/files/patch-depot-Makefile.in.diff
 mail/cyrus5-imapd/Portfile
 mail/dovecot/Portfile
 mail/dovecot2-antispam/Portfile
 mail/dovecot2/Portfile
 mail/dspam/Portfile
 mail/notmuch/files/patch-bindings-python-notmuch-globals.py.diff
 mail/postfinger/Portfile
 mail/surblhost/files/patch-surblhost.c.diff
 mail/sympa/files/patch-src-etc-script-sympa.in.diff
 mail/sympa/files/patch-src-lib-confdef.pm.diff
 print/a2ps-j/Portfile
 print/a2ps/files/patch-contrib_sample_Makefile.in
 print/a2ps/files/patch-lib__xstrrpl.c
 print/a2ps/files/patch-ps-base.ps
 print/abcm2ps/files/patch-Makefile.in.diff
 print/cups-pdf/Portfile
 print/cups-pdf/files/cups-pdf_links.sh
 print/denemo/Portfile
 print/epdfview/Portfile
 print/epstool/Portfile
 print/espgs/Portfile
 print/fondu/Portfile
 print/fonttools/Portfile
 print/ghostscript/files/patch-base_stdpre.h.diff
 print/latex2html/Portfile
 print/lcdf-typetools/Portfile
 print/libLASi/Portfile
 print/libLASi/files/patch-freetype-2.5.1.diff
 print/pdflib/Portfile
 print/pdfposter/Portfile
 print/ppmtomd/Portfile
 print/ps2eps/Portfile
 print/pscal/Portfile
 print/rlpr/Portfile
 print/transfig/Portfile
 science/EGSimulation/Portfile
 science/KlustaKwik/Portfile
 science/KlustaKwik/files/patch-KlustaKwik-makefile.diff
 science/KlustaKwik/files/patch-maskedKlustaKwik-makefile.diff
 science/OpenCSG/Portfile
 science/TwitterDemandCollector/Portfile
 science/airspy/files/patch-disable-std-gnu90.diff
 science/alliance/Portfile
 science/alps/Portfile
 science/alps/files/patch-CMakeLists.txt.diff
 science/alps/files/patch-config-FindPython.cmake.diff
 science/apbs/Portfile
 science/ape/files/patch-src-parser_symbols.F90.diff
 science/arb/Portfile
 science/arb/files/arb_macsetup
 science/arb/files/patch-ARB-arb.diff
 science/arb/files/patch-ARB-arb_compiler_version.pl.diff
 science/arb/files/patch-ARB-config.makefile.diff
 science/arb/files/patch-ARB-globalsosx.cpp.diff
 science/arb/files/patch-ARB-intro.fig.diff
 science/arb/files/patch-Makefile.diff
 science/archimedes/Portfile
 science/berkeleygw/files/patch-testsuite-Silane-PARATEC-Silane.test.diff
 science/caml-camlmpi/Portfile
 science/caml-camlmpi/files/META
 science/caml-camlmpi/files/Makefile.diff
 science/ccpnmr/Portfile
 science/ccpnmr/files/ccpnmr.patch
 science/cdf/Portfile
 science/cdo/Portfile
 science/cdsclient/Portfile
 science/cdsclient/files/patch-Makefile.in
 science/cdsclient/files/patch-configure
 science/ce/Portfile
 science/ce/files/patch-Makefiles.diff
 science/ce/files/patch-nonstandardcode.diff
 science/cfitsio/Portfile
 science/cfitsio/files/patch-Makefile.in.diff
 science/cfitsio/files/patch-configure.diff
 science/cgnslib/Portfile
 science/clustalx/Portfile
 science/clustalx/files/clustalx.in
 science/demeter/Portfile
 science/demeter/files/patch-DocBuilder-Artemis.pm.diff
 science/demeter/files/patch-DocBuilder-Athena.pm.diff
 science/dineroIV/Portfile
 science/dineroIV/files/patch-misc_c.diff
 science/drc-fir/Portfile
 science/drc-fir/files/patch-drc.diff
 science/eo/Portfile
 science/eo/files/patch-eoBit.h.diff
 science/eo/files/patch-eoFileSnapshot.h.diff
 science/eo/files/patch-eoGnuplot.cpp.diff
 science/eo/files/patch-make_checkpoint.h.diff
 science/eo/files/patch-make_checkpoint_FDC.h.diff
 science/eo/files/patch-make_checkpoint_assembled.h.diff
 science/eo/files/patch-make_checkpoint_pareto.h.diff
 science/eo/files/patch-make_help.cpp.diff
 science/erfa/Portfile
 science/exonerate/Portfile
 science/exonerate/files/patch-src-program-Makefile.am.diff
 science/exonerate/files/patch-src-program-Makefile.in.diff
 science/eye/Portfile
 science/fann/Portfile
 science/fastcap-wr/Portfile
 science/fasthenry-wr/Portfile
 science/fastlink/Portfile
 science/fcl/Portfile
 science/flann/Portfile
 science/flann/files/patch-CMakeLists.txt.diff
 science/flann/files/patch-src-python-CMakeLists.txt.diff
 science/freehdl/Portfile
 science/freehdl/files/kernel-sig-info.hh.patch
 science/freehdl/files/std-vhdl-types.hh.patch
 science/funtools/Portfile
 science/funtools/files/patch-funtools
 science/gadap/Portfile
 science/gds/files/patch-config-ac_dmtoffline.m4.diff
 science/geant4/files/geant4.10.0
 science/geant4/files/geant4.10.1
 science/geant4/files/geant4.9.5
 science/geant4/files/patch-cmake-Modules-
 Geant4BuildProjectConfig.cmake.4101.diff
 science/geant4/files/patch-cmake-Modules-
 Geant4BuildProjectConfig.cmake.495.diff
 science/geant4/files/patch-cmake-Modules-
 Geant4InterfaceOptions.cmake.4100.diff
 science/geant4/files/patch-cmake-Modules-
 Geant4InterfaceOptions.cmake.4101.diff
 science/geant4/files/patch-cmake-Modules-
 Geant4InterfaceOptions.cmake.495.diff
 science/geant4/files/patch-cmake-Modules-
 Geant4InterfaceOptions.cmake.496.diff
 science/geant4/files/patch-upstream-examples-advanced-
 xray_fluorescence.diff
 science/geant4/files/patch-upstream-qt.496.diff
 science/geant4/files/patch-upstream-source-interfaces-common-src-
 G4Qt.cc.495.diff
 science/geda-gaf/Portfile
 science/geoexpress-sdk/Portfile
 science/geomview/Portfile
 science/geomview/files/patch-iobuffer.c.diff
 science/geos/Portfile
 science/gerbil/Portfile
 science/gerbil/files/patch-lsb__lsbhreader.cpp-missing-include.diff
 science/ggobi/Portfile
 science/ggobi/files/patch-src-barchart.diff
 science/ggobi/files/patch-src-texture.diff
 science/gildas/files/patch-admin-gildas-env.sh.diff
 science/gmsh/Portfile
 science/gmsh/files/patch-CMakeLists.txt.diff
 science/gmt4/Portfile
 science/gnucap/Portfile
 science/gnucap/files/patch-Make2.g++
 science/gnuradio/files/patch-cmake-expand.devel.diff
 science/gnuradio/files/patch-cmake-expand.release.diff
 science/gnuradio/files/patch-gnuradio-core_src_lib_io_ppio_ppdev.h.diff
 science/gnuradio/files/patch-gnuradio-core_swig_include-std_string.i.diff
 science/gnuradio/files/patch-gnuradio-core_swig_std_std_container.i.diff
 science/gnuradio/files/patch-path-order.diff
 science/gnuradio/files/patch-volk_gen_archs.xml.legacy.diff
 science/gnuradio/files/patch-volk_lib_CMakeLists.txt.legacy.diff
 science/gplcver/Portfile
 science/gplcver/files/patch-inst_tst.sh.diff
 science/gpp4/Portfile
 science/gqrx/files/patch-fix-real-imag.diff
 science/gqrx/files/patch-gqrx.pro-legacy.diff
 science/gqrx/files/patch-gqrx.pro.diff
 science/gr-fcdproplus/Portfile
 science/gr-pyqt/Portfile
 science/gr-rds/files/patch-lib_encoder_impl.cc.diff
 science/gromacs/Portfile
 science/gst-plugins-math/Portfile
 science/gstlal-calibration/Portfile
 science/gvemod-cplxview/Portfile
 science/gvemod-crayola/Portfile
 science/gvemod-ndview/Portfile
 science/gvemod-xforms-example/Portfile
 science/gvemodules-xforms/Portfile
 science/gwyddion/Portfile
 science/gwyddion/files/Info.plist
 science/h4h5tools/Portfile
 science/h5utils/Portfile
 science/hamlib/Portfile
 science/hdf5-lz4-plugin/Portfile
 science/hdfeos/Portfile
 science/hdfeos5/Portfile
 science/healpix-cxx/Portfile
 science/healpix/Portfile
 science/healpix/files/patch-build.xml.diff
 science/hmmer/Portfile
 science/htcondor/files/condor_config.local
 science/ifeffit/Portfile
 science/indi/Portfile
 science/jags/Portfile
 science/jmol/Portfile
 science/kst/Portfile
 science/kst/files/patch-CMakeLists.diff
 science/libANN/Portfile
 science/libctl/Portfile
 science/libframe/Portfile
 science/libnc-dap/Portfile
 science/libnova/Portfile
 science/liboglappth/Portfile
 science/libstree/files/create-dylib.sh
 science/libstree/files/patch-src__lst_string.h
 science/libtcd/Portfile
 science/libxc/Portfile
 science/liquid-dsp/files/patch-makefile.in.diff
 science/liquid-dsp/files/patch-src_modem_src_freqmod.c.diff
 science/magic-devel/Portfile
 science/maniview/files/patch-maniview.c.diff
 science/mddisplay/Portfile
 science/minc/Portfile
 science/miriad/Portfile
 science/mmdb/Portfile
 science/ncarg/files/patch-config-ymake.diff
 science/ncview/Portfile
 science/ncview/files/patch-configure.diff
 science/ndmanager2/Portfile
 science/ocaml-mpi/files/Makefile.diff
 science/ompl/Portfile
 science/openbabel/Portfile
 science/openbabel/files/patch-shared_ptr.diff
 science/opendx/files/configure.ac.diff
 science/opendx/files/main.diff
 science/opendx/files/patch-src-exec-dpexec-packet.c.diff
 science/openmpi/files/openmpi-devel-gcc43-fortran
 science/openscad/Portfile
 science/pdb2pqr/Portfile
 science/peekabot-client/files/patch-disable_compression.diff
 science/perlprimer/Portfile
 science/plplot510/files/patch-plConfig.h.in.diff
 science/pqp/files/patch-src-PQP_Compile.h.diff
 science/pvm/Portfile
 science/pymol/files/pmg_tk_platform.patch
 science/pymol/files/pymol_shell.diff
 science/qfsm/Portfile
 science/qucs/Portfile
 science/qucs/files/patch-configure.diff
 science/relax/files/relax.patch
 science/root/Portfile
 science/root5/files/patch-builtin-afterimage-disabletiff.diff
 science/root5/files/root5
 science/sbsat/files/patch-configure.ac.diff
 science/sbsat/files/patch-src-generator-Makefile.am.diff
 science/sbsat/files/patch-src-generator-gentest.cc.diff
 science/sbsat/files/slider3_base.py
 science/scidavis/files/patch-OriginObj.diff
 science/scidavis/files/patch-noQtAssistant.diff
 science/scotch/Portfile
 science/seqan-apps/Portfile
 science/setiathome/Portfile
 science/setiathome/files/patch-README.diff
 science/skymaker/Portfile
 science/solid/Portfile
 science/solid/files/patch-GLUT.diff
 science/solid/files/patch-configure.ac.diff
 science/sparky/Portfile
 science/sparky/files/sparky-build.diff
 science/stiff/Portfile
 science/tempo/files/patch-tempo.c.diff
 science/tophat/Portfile
 science/triangle/Portfile
 science/vbs/Portfile
 science/vbs/files/patch-Makefile.in
 science/viking/Portfile
 science/wcalc/files/patch-utils_shtml2html.diff
 science/weka/files/patch-build.xml.diff
 science/whizard/Portfile
 science/xastir/files/patch-configure.ac.diff
 science/xephem/files/patch-Makefile.diff
 science/xloops/files/patch-fcntimer.cpp
 science/xloops/files/patch-ginsh_parser.yy
 science/xpa/Portfile
 science/xraylib/files/configure.ac.diff
 science/xrmc/Portfile
 science/xrootd/files/patch-cmake-XRootDOSDefs.cmake.diff
 science/yorick-av/Portfile
 science/yorick-cubeview/Portfile
 science/yorick-imutil/Portfile
 science/yorick-ml4/Portfile
 science/yorick-ml4/files/patch-ml4.i.diff
 science/yorick-soy/Portfile
 science/yorick-soy/files/patch-soy.i.diff
 science/yorick-spydr/Portfile
 science/yorick-yao/Portfile
 science/yorick-yeti/Portfile
 science/yorick/Portfile
 IO error encountered -- skipping file deletion

 sent 22823 bytes  received 1235989 bytes  503524.80 bytes/sec
 total size is 41519260  speedup is 32.98
 rsync error: some files could not be transferred (code 23) at
 /SourceCache/rsync/rsync-45/rsync/main.c(1400) [generator=2.6.9]
 Command failed: /usr/bin/rsync -rtzv --delete-after '--
 exclude=/PortIndex*' rsync://rsync.macports.org/release/ports/
 /opt/local/var/macports/sources/rsync.macports.org/release/ports
 Exit code: 23
 Error: Synchronization of the local ports tree failed doing rsync
 Error: Couldn't sync the ports tree: Synchronization of 1 source(s) failed
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: /opt/local/bin/port: port selfupdate failed: Couldn't sync the
 ports tree: Synchronization of 1 source(s) failed

-- 
Ticket URL: <https://trac.macports.org/ticket/49260>
MacPorts <https://www.macports.org/>
Ports system for OS X

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