[MacPorts] #48789: py27-tables @ 3.2.1_0 not building on OSX 10.9 Mavericks, missing mpi.h from hdf5

MacPorts noreply at macports.org
Mon Sep 7 03:59:38 PDT 2015


#48789: py27-tables @ 3.2.1_0 not building on OSX 10.9 Mavericks, missing mpi.h
from hdf5
-----------------------+---------------------------------
 Reporter:  gnurser@…  |      Owner:  macports-tickets@…
     Type:  defect     |     Status:  new
 Priority:  Normal     |  Milestone:
Component:  ports      |    Version:  2.3.3
 Keywords:             |       Port:  py27-tables at 3.2.1_0
-----------------------+---------------------------------
 Seems to be missing mpi.h from hdf5

 I have an up to date versions of this,

 hdf5 @1.8.15-patch1_0+cxx+gcc49+openmpi (active)

 {{{
 /lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:
 :info:build
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2:
 warning: "Using deprecated NumPy API, disable it by "          "#defining
 NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
 :info:build #warning "Using deprecated NumPy API, disable it by " \
 :info:build  ^
 :info:build In file included from tables/utilsextension.c:268:
 :info:build In file included from /opt/local/include/hdf5.h:24:
 :info:build /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file
 not found
 :info:build #   include <mpi.h>
 :info:build             ^
 :info:build 1 warning and 1 error generated.
 :info:build error: command '/usr/bin/clang' failed with exit status 1
 :info:build Command failed:  cd
 "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports
 .org_release_tarballs_ports_python_py-
 tables/py27-tables/work/tables-3.2.1" &&
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
 setup.py --no-user-cfg build_ext --inplace --hdf5=/opt/local
 --bzip2=/opt/local --lzo=/opt/local --blosc=/opt/
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/48789>
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