[MacPorts] #50543: gildas @201512a: Undefined symbols _ftvers_ (was: problem building gildas in ElCapitan)

Thu Feb 4 03:36:37 PST 2016

#50543: gildas @201512a: Undefined symbols _ftvers_
-------------------------------+----------------------
  Reporter:  jaime.e.pineda@…  |      Owner:  smaret@…
      Type:  defect            |     Status:  new
  Priority:  Normal            |  Milestone:
 Component:  ports             |    Version:  2.3.4
Resolution:                    |   Keywords:
      Port:  gildas            |
-------------------------------+----------------------
Changes (by ryandesign@…):

 * owner:  macports-tickets@… => smaret@…

Old description:

> Hi,
>
> I tried to install Gildas on my desktop which I just upgraded to
> ElCapitan. The Macports installation is fresh, and I already have the
> latest XCode and gcc installed. I also used `port select ` to select the
> macport installed gcc. However I get the following error message:
>
> (cd ./built/x86_64-darwin-gfortran && /opt/local/bin/gfortran-mp-5
> -dynamiclib   -L/opt/local/lib -Wl,-headerpad_max_install_names -shared
> -o /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so
> -install_name /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so
> getcar.o ctrlc.o import-c.o sic-message-c.o sic-sicimport.o gmaster-c.o
> sic_python.o sic_parse_mod.o sic_inter_mod.o sic-interfaces-public.o sic-
> interfaces-private.o sic-interfaces.o aliasvar.o argauto.o abbrev.o
> analyse.o argumexp.o codefunc.o compute.o controlc.o defvar.o delete.o
> delvar.o desc.o dofunc.o dofuncl.o dofuncs.o dofuncd.o dofunci.o editor.o
> error.o evaluate.o examine.o execsic.o expand_macro.o expr.o fill.o
> fits.o foreign.o forme.o get.o getcom.o getlin.o hashing.o header.o
> help.o import.o inicli.o inihel.o interstate.o intrinsic.o let.o liste.o
> loop.o lun.o macro.o math.o minimize.o modify.o operand.o powell.o
> procedure.o prompt.o read.o reduce.o sicfits.o gmessage.o sicopt.o sic-
> package.o sic-python-f.o sicsay.o sicset.o sicsub.o sicvms.o siman.o
> sort.o stack.o symbol.o task.o transpose.o varexp.o varexp-generic.o
> vector.o wrpro.o xvariable.o zroutines.o gmaster.o sic-message.o \
>         -o
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so
> -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib -L/opt/local/lib
> -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib
> -L/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
> -lggui -lgcore -lgio -lgwcs -lgmath -lgsys -lginc -lslatec -framework
> Accelerate -lcfitsio
> -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -ldl
> -framework CoreFoundation -lpython2.7  -lm -ldl -install_name
> @executable_path/../lib/libsic.so)
> Undefined symbols for architecture x86_64:
>   "_ftvers_", referenced from:
>       _sicapropos_ in sicset.o
>       _sicapropos_cfitsio_vers_ in sicset.o
> ld: symbol(s) not found for architecture x86_64
> collect2: error: ld returned 1 exit status
> make[3]: ***
> [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so] Error 1
> make[2]: *** [default-install] Error 1
> make[1]: *** [default-install] Error 1
> make: *** [default-install] Error 1
> Command failed: source admin/gildas-env.sh -c /opt/local/bin/gfortran-
> mp-5 -s
> /opt/local/include:/opt/local/lib:/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
> && export GAG_SLDFLAGS='-shared -o /opt/local/lib/gildas/x86_64-darwin-
> gfortran/lib/$(notdir $@) -install_name /opt/local/lib/gildas/x86_64
> -darwin-gfortran/lib/$(notdir $@)' && export
> DYLD_LIBRARY_PATH=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib && make install
> Exit code: 2
> Error: org.macports.build for port gildas returned: command execution
> failed
> Warning: targets not executed for gildas: org.macports.activate
> org.macports.build org.macports.destroot org.macports.install
> Please see the log file for port gildas for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/main.log
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port gildas failed
>
> The last lines of the log report gives this information:
> :info:build (cd ./built/x86_64-darwin-gfortran && /opt/local/bin
> /gfortran-mp-5  -dynamiclib   -L/opt/local/lib
> -Wl,-headerpad_max_install_names -shared -o /opt/local/lib/gildas/x86_64
> -darwin-gfortran/lib/libsic.so -install_name /opt/local/lib/gildas/x86_64
> -darwin-gfortran/lib/libsic.so getcar.o ctrlc.o import-c.o sic-
> message-c.o sic-sicimport.o gmaster-c.o sic_python.o sic_parse_mod.o
> sic_inter_mod.o sic-interfaces-public.o sic-interfaces-private.o sic-
> interfaces.o aliasvar.o argauto.o abbrev.o analyse.o argumexp.o
> codefunc.o compute.o controlc.o defvar.o delete.o delvar.o desc.o
> dofunc.o dofuncl.o dofuncs.o dofuncd.o dofunci.o editor.o error.o
> evaluate.o examine.o execsic.o expand_macro.o expr.o fill.o fits.o
> foreign.o forme.o get.o getcom.o getlin.o hashing.o header.o help.o
> import.o inicli.o inihel.o interstate.o intrinsic.o let.o liste.o loop.o
> lun.o macro.o math.o minimize.o modify.o operand.o powell.o procedure.o
> prompt.o read.o reduce.o sicfits.o gmessage.o sicopt.o sic-package.o sic-
> python-f.o sicsay.o sicset.o sicsub.o sicvms.o siman.o sort.o stack.o
> symbol.o task.o transpose.o varexp.o varexp-generic.o vector.o wrpro.o
> xvariable.o zroutines.o gmaster.o sic-message.o \
> :info:build     -o
> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so
> -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib -L/opt/local/lib
> -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib
> -L/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
> -lggui -lgcore -lgio -lgwcs -lgmath -lgsys -lginc -lslatec -framework
> Accelerate -lcfitsio
> -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -ldl
> -framework CoreFoundation -lpython2.7  -lm -ldl -install_name
> @executable_path/../lib/libsic.so)
> :info:build Undefined symbols for architecture x86_64:
> :info:build   "_ftvers_", referenced from:
> :info:build       _sicapropos_ in sicset.o
> :info:build       _sicapropos_cfitsio_vers_ in sicset.o
> :info:build ld: symbol(s) not found for architecture x86_64
> :info:build collect2: error: ld returned 1 exit status
> :info:build make[3]: ***
> [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so] Error 1
> :info:build make[2]: *** [default-install] Error 1
> :info:build make[1]: *** [default-install] Error 1
> :info:build make: *** [default-install] Error 1
> :info:build Command failed: source admin/gildas-env.sh -c /opt/local/bin
> /gfortran-mp-5 -s
> /opt/local/include:/opt/local/lib:/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
> && export GAG_SLDFLAGS='-shared -o /opt/local/lib/gildas/x86_64-darwin-
> gfortran/lib/$(notdir $@) -install_name /opt/local/lib/gildas/x86_64
> -darwin-gfortran/lib/$(notdir $@)' && export
> DYLD_LIBRARY_PATH=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
> /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib && make install
> :info:build Exit code: 2
> :error:build org.macports.build for port gildas returned: command
> execution failed
> :debug:build Error code: NONE
> :debug:build Backtrace: command execution failed
>     while executing
> "proc-org.macports.build-build-0 org.macports.build"
>     ("eval" body line 1)
>     invoked from within
> "eval $procedure $targetname"
> :info:build Warning: targets not executed for gildas:
> org.macports.activate org.macports.build org.macports.destroot
> org.macports.install
> :notice:build Please see the log file for port gildas for details:
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/main.log
>

> Cheers,
> Jaime

New description:

 Hi,

 I tried to install Gildas on my desktop which I just upgraded to
 ElCapitan. The Macports installation is fresh, and I already have the
 latest XCode and gcc installed. I also used `port select ` to select the
 macport installed gcc. However I get the following error message:

 {{{
 (cd ./built/x86_64-darwin-gfortran && /opt/local/bin/gfortran-mp-5
 -dynamiclib   -L/opt/local/lib -Wl,-headerpad_max_install_names -shared -o
 /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so -install_name
 /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so getcar.o
 ctrlc.o import-c.o sic-message-c.o sic-sicimport.o gmaster-c.o
 sic_python.o sic_parse_mod.o sic_inter_mod.o sic-interfaces-public.o sic-
 interfaces-private.o sic-interfaces.o aliasvar.o argauto.o abbrev.o
 analyse.o argumexp.o codefunc.o compute.o controlc.o defvar.o delete.o
 delvar.o desc.o dofunc.o dofuncl.o dofuncs.o dofuncd.o dofunci.o editor.o
 error.o evaluate.o examine.o execsic.o expand_macro.o expr.o fill.o fits.o
 foreign.o forme.o get.o getcom.o getlin.o hashing.o header.o help.o
 import.o inicli.o inihel.o interstate.o intrinsic.o let.o liste.o loop.o
 lun.o macro.o math.o minimize.o modify.o operand.o powell.o procedure.o
 prompt.o read.o reduce.o sicfits.o gmessage.o sicopt.o sic-package.o sic-
 python-f.o sicsay.o sicset.o sicsub.o sicvms.o siman.o sort.o stack.o
 symbol.o task.o transpose.o varexp.o varexp-generic.o vector.o wrpro.o
 xvariable.o zroutines.o gmaster.o sic-message.o \
         -o
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so
 -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib -L/opt/local/lib
 -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib
 -L/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
 -lggui -lgcore -lgio -lgwcs -lgmath -lgsys -lginc -lslatec -framework
 Accelerate -lcfitsio
 -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -ldl
 -framework CoreFoundation -lpython2.7  -lm -ldl -install_name
 @executable_path/../lib/libsic.so)
 Undefined symbols for architecture x86_64:
   "_ftvers_", referenced from:
       _sicapropos_ in sicset.o
       _sicapropos_cfitsio_vers_ in sicset.o
 ld: symbol(s) not found for architecture x86_64
 collect2: error: ld returned 1 exit status
 make[3]: ***
 [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so] Error 1
 make[2]: *** [default-install] Error 1
 make[1]: *** [default-install] Error 1
 make: *** [default-install] Error 1
 Command failed: source admin/gildas-env.sh -c /opt/local/bin/gfortran-mp-5
 -s
 /opt/local/include:/opt/local/lib:/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
 && export GAG_SLDFLAGS='-shared -o /opt/local/lib/gildas/x86_64-darwin-
 gfortran/lib/$(notdir $@) -install_name /opt/local/lib/gildas/x86_64
 -darwin-gfortran/lib/$(notdir $@)' && export
 DYLD_LIBRARY_PATH=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib && make install
 Exit code: 2
 Error: org.macports.build for port gildas returned: command execution
 failed
 Warning: targets not executed for gildas: org.macports.activate
 org.macports.build org.macports.destroot org.macports.install
 Please see the log file for port gildas for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/main.log
 To report a bug, follow the instructions in the guide:
     http://guide.macports.org/#project.tickets
 Error: Processing of port gildas failed
 }}}

 The last lines of the log report gives this information:
 {{{
 :info:build (cd ./built/x86_64-darwin-gfortran && /opt/local/bin/gfortran-
 mp-5  -dynamiclib   -L/opt/local/lib -Wl,-headerpad_max_install_names
 -shared -o /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so
 -install_name /opt/local/lib/gildas/x86_64-darwin-gfortran/lib/libsic.so
 getcar.o ctrlc.o import-c.o sic-message-c.o sic-sicimport.o gmaster-c.o
 sic_python.o sic_parse_mod.o sic_inter_mod.o sic-interfaces-public.o sic-
 interfaces-private.o sic-interfaces.o aliasvar.o argauto.o abbrev.o
 analyse.o argumexp.o codefunc.o compute.o controlc.o defvar.o delete.o
 delvar.o desc.o dofunc.o dofuncl.o dofuncs.o dofuncd.o dofunci.o editor.o
 error.o evaluate.o examine.o execsic.o expand_macro.o expr.o fill.o fits.o
 foreign.o forme.o get.o getcom.o getlin.o hashing.o header.o help.o
 import.o inicli.o inihel.o interstate.o intrinsic.o let.o liste.o loop.o
 lun.o macro.o math.o minimize.o modify.o operand.o powell.o procedure.o
 prompt.o read.o reduce.o sicfits.o gmessage.o sicopt.o sic-package.o sic-
 python-f.o sicsay.o sicset.o sicsub.o sicvms.o siman.o sort.o stack.o
 symbol.o task.o transpose.o varexp.o varexp-generic.o vector.o wrpro.o
 xvariable.o zroutines.o gmaster.o sic-message.o \
 :info:build     -o
 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so
 -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib -L/opt/local/lib
 -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib
 -L/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
 -lggui -lgcore -lgio -lgwcs -lgmath -lgsys -lginc -lslatec -framework
 Accelerate -lcfitsio
 -L/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib -ldl
 -framework CoreFoundation -lpython2.7  -lm -ldl -install_name
 @executable_path/../lib/libsic.so)
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "_ftvers_", referenced from:
 :info:build       _sicapropos_ in sicset.o
 :info:build       _sicapropos_cfitsio_vers_ in sicset.o
 :info:build ld: symbol(s) not found for architecture x86_64
 :info:build collect2: error: ld returned 1 exit status
 :info:build make[3]: ***
 [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib/libsic.so] Error 1
 :info:build make[2]: *** [default-install] Error 1
 :info:build make[1]: *** [default-install] Error 1
 :info:build make: *** [default-install] Error 1
 :info:build Command failed: source admin/gildas-env.sh -c /opt/local/bin
 /gfortran-mp-5 -s
 /opt/local/include:/opt/local/lib:/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Versions/Current/
 && export GAG_SLDFLAGS='-shared -o /opt/local/lib/gildas/x86_64-darwin-
 gfortran/lib/$(notdir $@) -install_name /opt/local/lib/gildas/x86_64
 -darwin-gfortran/lib/$(notdir $@)' && export
 DYLD_LIBRARY_PATH=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/work
 /gildas-src-dec15a/integ/x86_64-darwin-gfortran/lib && make install
 :info:build Exit code: 2
 :error:build org.macports.build for port gildas returned: command
 execution failed
 :debug:build Error code: NONE
 :debug:build Backtrace: command execution failed
     while executing
 "proc-org.macports.build-build-0 org.macports.build"
     ("eval" body line 1)
     invoked from within
 "eval $procedure $targetname"
 :info:build Warning: targets not executed for gildas:
 org.macports.activate org.macports.build org.macports.destroot
 org.macports.install
 :notice:build Please see the log file for port gildas for details:
 /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_gildas/gildas/main.log
 }}}

 Cheers,\\
 Jaime

--

-- 
Ticket URL: <https://trac.macports.org/ticket/50543#comment:1>
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