[MacPorts] #50597: py27-scipy+atlas does not import properly

[MacPorts]

#50597: py27-scipy+atlas does not import properly
-----------------------+--------------------------------
 Reporter:  smithsp@…  |      Owner:  macports-tickets@…
     Type:  defect     |     Status:  new
 Priority:  Normal     |  Milestone:
Component:  ports      |    Version:  2.3.4
 Keywords:             |       Port:  py27-scipy
-----------------------+--------------------------------
 After installing py27-scipy+atlas, scipy.interpolate will not import
 correctly.  Here are steps I took and the output
 {{{
 ~/OMFIT-source2 117 : sudo port install py27-scipy +atlas
 --->  Computing dependencies for py27-scipy
 --->  Deactivating py27-scipy @0.16.1_0+gfortran
 --->  Cleaning py27-scipy
 --->  Activating py27-scipy @0.16.1_0+atlas+gfortran
 --->  Cleaning py27-scipy
 --->  Scanning binaries for linking errors
 --->  No broken files found.
 ~/OMFIT-source2 118 : which python
 /opt/local/bin/python
 ~/OMFIT-source2 119 : python -c 'import scipy.interpolate'
 Traceback (most recent call last):
   File "<string>", line 1, in <module>
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/interpolate/__init__.py", line 145, in <module>
     from .interpolate import *
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/interpolate/interpolate.py", line 15, in <module>
     import scipy.linalg
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/linalg/__init__.py", line 172, in <module>
     from .misc import *
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/linalg/misc.py", line 6, in <module>
     from .lapack import get_lapack_funcs
   File
 "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/linalg/lapack.py", line 356, in <module>
     from scipy.linalg import _flapack
 ImportError:
 dlopen(/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/linalg/_flapack.so, 2): Symbol not found: _cgegv_
   Referenced from:
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/linalg/_flapack.so
   Expected in: flat namespace
  in
 /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
 /site-packages/scipy/linalg/_flapack.so
 ~/OMFIT-source2 120 : sudo port selfupdate
 --->  Updating MacPorts base sources using rsync
 MacPorts base version 2.3.4 installed,
 MacPorts base version 2.3.4 downloaded.
 --->  Updating the ports tree
 --->  MacPorts base is already the latest version

 The ports tree has been updated. To upgrade your installed ports, you
 should run
   port upgrade outdated
 ~/OMFIT-source2 121 : port outdated | grep scipy
 ~/OMFIT-source2 122 :
 }}}

 Note that atlas took a long time to build, during which I closed my laptop
 twice, which induced the computer sleep state.  The next step I plan on
 taking is rebuilding atlas, but will not try that until tomorrow.  If
 there are any pointers for anything else to try, I would appreciate it.

-- 
Ticket URL: <https://trac.macports.org/ticket/50597>
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