[MacPorts] #51680: netcdf-4.4.0_3+dap+gcc6+hdf4+netcdf4 upgrade/build error

[MacPorts]

#51680: netcdf-4.4.0_3+dap+gcc6+hdf4+netcdf4 upgrade/build error
--------------------+--------------------------------
 Reporter:  jml1@…  |      Owner:  macports-tickets@…
     Type:  defect  |     Status:  new
 Priority:  Normal  |  Milestone:
Component:  ports   |    Version:  2.3.4
 Keywords:          |       Port:
--------------------+--------------------------------
 Netcdf-4.4.0_3 fails to build on Mac OSX 10.11 (Xcode 7.3.1). Initially,
 the error occurred upgrading to
 netcdf-4.4.0_3+dap+gcc49+hdf4+netcdf4+openmpi, but I simplified to the
 headline config with a fresh install (i.e. after "sudo port -f uninstall
 installed") and I still get the same problem

 The failure occurs during linking of the C shared library
 "libnetcdf.dylib" with the following error:

 {{{
 :info:build Undefined symbols for architecture x86_64:
 :info:build   "_jpeg_CreateCompress", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build   "_jpeg_CreateDecompress", referenced from:
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_destroy_compress", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build   "_jpeg_destroy_decompress", referenced from:
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_finish_compress", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build   "_jpeg_finish_decompress", referenced from:
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_read_header", referenced from:
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_read_scanlines", referenced from:
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_resync_to_restart", referenced from:
 :info:build       _jpeg_HDF_src in libdf.a(dfunjpeg.o)
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_set_defaults", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build   "_jpeg_set_quality", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build   "_jpeg_start_compress", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build   "_jpeg_start_decompress", referenced from:
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_std_error", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build       _DFCIunjpeg in libdf.a(dfunjpeg.o)
 :info:build   "_jpeg_write_scanlines", referenced from:
 :info:build       _DFCIjpeg in libdf.a(dfjpeg.o)
 :info:build ld: symbol(s) not found for architecture x86_64
 :info:build collect2: error: ld returned 1 exit status
 :info:build make[2]: *** [liblib/libnetcdf.11.0.0.dylib] Error 1
 }}}

 Furthermore:

 {{{
 /o/l/lib> port installed jpeg
 The following ports are currently installed:
   jpeg @9a_1 (active)
 }}}

 and, for example:

 {{{
 /o/l/lib> nm "libdf.a(dfjpeg.o)"

 libdf.a(dfjpeg.o):
 0000000000000260 T _DFCIjpeg
 0000000000000510 s _DFCIjpeg.FUNC
                  U _HEpush
                  U _Hendaccess
                  U _Hstartaccess
                  U _Hstartwrite
                  U _Hwrite
                  U ___stack_chk_fail
                  U ___stack_chk_guard
                  U _calloc
                  U _free
 00000000000000c0 T _hdf_empty_output_buffer
 0000000000000000 T _hdf_init_destination
 0000000000000110 T _hdf_term_destination
                  U _jpeg_CreateCompress
 0000000000000180 T _jpeg_HDF_dest
 0000000000000502 s _jpeg_HDF_dest.FUNC
 0000000000000240 T _jpeg_HDF_dest_term
                  U _jpeg_destroy_compress
                  U _jpeg_finish_compress
 0000000000000708 S _jpeg_message_handler
                  U _jpeg_set_defaults
                  U _jpeg_set_quality
                  U _jpeg_start_compress
                  U _jpeg_std_error
                  U _jpeg_write_scanlines
                  U _malloc
 }}}

-- 
Ticket URL: <https://trac.macports.org/ticket/51680>
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